Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   CS949_RS04130 Genome accession   NZ_LT795114
Coordinates   816054..817034 (+) Length   326 a.a.
NCBI ID   WP_001055649.1    Uniprot ID   A0A8F2UXN2
Organism   Salmonella enterica subsp. enterica serovar Typhimurium isolate VNB151-sc-2315230     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 811054..822034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS949_RS04100 - 811632..812639 (+) 1008 WP_000252197.1 DUF1202 domain-containing protein -
  CS949_RS04105 hemW 812730..813866 (-) 1137 WP_001096518.1 radical SAM family heme chaperone HemW -
  CS949_RS04110 - 813859..814452 (-) 594 WP_001174769.1 XTP/dITP diphosphatase -
  CS949_RS04115 yggU 814460..814750 (-) 291 WP_001277201.1 DUF167 family protein YggU -
  CS949_RS04120 - 814747..815313 (-) 567 WP_001094848.1 YggT family protein -
  CS949_RS04125 - 815332..816036 (-) 705 WP_000997812.1 YggS family pyridoxal phosphate-dependent enzyme -
  CS949_RS04130 pilT 816054..817034 (+) 981 WP_001055649.1 type IV pilus twitching motility protein PilT Machinery gene
  CS949_RS04135 - 817166..817852 (+) 687 WP_000098329.1 IclR family transcriptional regulator -
  CS949_RS04140 ruvX 817899..818315 (-) 417 WP_000017096.1 Holliday junction resolvase RuvX -
  CS949_RS04145 - 818315..818878 (-) 564 WP_001053171.1 YqgE/AlgH family protein -
  CS949_RS04150 gshB 819094..820041 (-) 948 WP_000593248.1 glutathione synthase -
  CS949_RS04155 rsmE 820061..820792 (-) 732 WP_001222489.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  CS949_RS04160 endA 820869..821576 (-) 708 WP_000286122.1 deoxyribonuclease I -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36150.38 Da        Isoelectric Point: 8.0973

>NTDB_id=1146185 CS949_RS04130 WP_001055649.1 816054..817034(+) (pilT) [Salmonella enterica subsp. enterica serovar Typhimurium isolate VNB151-sc-2315230]
MNMEEIVTLSVKHNVSDLHLCNAWPARWRKQGRMENAPFTAPDVDRLLLDWLNDAQQYQWRTHGQLDFAVSLSGTRRLRA
SAFTHQQGTSLALRLLPERCPDLAKIQTPPIVPALLASENGLILVTGATGCGKSTTLAAMVGYLNQHADKHILTLEDPIE
YRYTSKRCLIQQREIGQHCATFAAGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKEPVRSQLAGSLRAVLSQKLEVDRQDGRVALFELLINTPATGNLIREGKLHQLAHVIQTGQQQGMMTFAQSAQWR
QAQGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=1146185 CS949_RS04130 WP_001055649.1 816054..817034(+) (pilT) [Salmonella enterica subsp. enterica serovar Typhimurium isolate VNB151-sc-2315230]
ATGAATATGGAAGAAATTGTGACGCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGTAACGCCTGGCCTGCGCG
ATGGCGCAAACAAGGACGCATGGAGAACGCGCCTTTTACCGCGCCTGATGTCGACAGGCTTCTGCTTGATTGGCTTAATG
ATGCGCAACAATATCAGTGGCGAACGCACGGCCAGCTTGATTTCGCCGTCTCGCTGTCTGGCACGCGGCGCCTGCGCGCC
AGTGCGTTCACACATCAACAGGGAACGTCGCTGGCGCTACGGCTATTGCCCGAGCGCTGTCCTGATCTGGCGAAAATCCA
GACGCCGCCGATAGTACCCGCACTGCTTGCCAGCGAGAACGGACTGATTCTGGTCACTGGCGCTACTGGCTGCGGGAAGT
CCACCACGCTGGCGGCGATGGTGGGATATCTTAATCAACATGCCGATAAACACATCCTGACGCTGGAAGATCCTATTGAG
TACCGTTACACCAGCAAGCGTTGCCTGATACAGCAGCGGGAAATCGGCCAGCATTGCGCCACTTTTGCCGCCGGGCTGCG
CGCAGCGTTACGTGAAGATCCTGATGTCATTTTGCTGGGAGAGCTGCGTGACAGCGAGACCATTCGCCTGGCGCTGACGG
CGGCGGAAACGGGGCATCTGGTACTGGCAACCCTGCATACTCGCGGTGCGGCGCAGGCGGTGGAAAGATTAGTGGATAGT
TTTCCGGCGCAGGAAAAAGAACCGGTACGCAGCCAACTGGCGGGTAGTCTGCGCGCCGTACTATCACAAAAACTGGAGGT
CGACAGACAGGATGGGCGCGTGGCGTTGTTTGAATTACTGATTAATACGCCAGCCACAGGGAATTTGATCCGTGAAGGCA
AACTCCATCAGTTGGCCCACGTGATACAAACCGGGCAGCAGCAGGGGATGATGACATTCGCCCAGAGCGCGCAATGGCGT
CAGGCGCAGGGACGACTGTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(77-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

48.93

100

0.491
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

48.93

100

0.491
  pilT Neisseria meningitidis 8013

47.866

100

0.482
  pilT Neisseria gonorrhoeae MS11

47.561

100

0.479
  pilT Acinetobacter baumannii D1279779

45.872

100

0.46
  pilT Acinetobacter baumannii strain A118

45.872

100

0.46
  pilT Acinetobacter nosocomialis M2

45.566

100

0.457
  pilT Pseudomonas stutzeri DSM 10701

45.26

100

0.454
  pilT Acinetobacter baylyi ADP1

45.26

100

0.454
  pilT Pseudomonas aeruginosa PAK

44.954

100

0.451
  pilT Legionella pneumophila strain ERS1305867

44.969

97.546

0.439
  pilT Legionella pneumophila strain Lp02

44.969

97.546

0.439
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.509

97.546

0.405
  pilU Vibrio cholerae strain A1552

38.558

97.853

0.377
  pilU Pseudomonas stutzeri DSM 10701

36.556

100

0.371
  pilU Acinetobacter baylyi ADP1

36.533

99.08

0.362

Multiple sequence alignment