Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   DQO02_RS04360 Genome accession   NZ_LS483465
Coordinates   844601..845581 (+) Length   326 a.a.
NCBI ID   WP_023202686.1    Uniprot ID   -
Organism   Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10080     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 839601..850581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQO02_RS04330 (NCTC10080_00831) - 840179..841186 (+) 1008 WP_000252187.1 DUF1202 domain-containing protein -
  DQO02_RS04335 (NCTC10080_00832) hemW 841277..842413 (-) 1137 WP_023202688.1 radical SAM family heme chaperone HemW -
  DQO02_RS04340 (NCTC10080_00833) - 842406..842999 (-) 594 WP_001174769.1 XTP/dITP diphosphatase -
  DQO02_RS04345 (NCTC10080_00834) yggU 843007..843297 (-) 291 WP_001277205.1 DUF167 family protein YggU -
  DQO02_RS04350 (NCTC10080_00835) - 843294..843860 (-) 567 WP_001094848.1 YggT family protein -
  DQO02_RS04355 (NCTC10080_00836) - 843879..844583 (-) 705 WP_023202687.1 YggS family pyridoxal phosphate-dependent enzyme -
  DQO02_RS04360 (NCTC10080_00837) pilT 844601..845581 (+) 981 WP_023202686.1 type IV pilus twitching motility protein PilT Machinery gene
  DQO02_RS04365 (NCTC10080_00838) - 845709..846395 (+) 687 WP_023202685.1 IclR family transcriptional regulator -
  DQO02_RS04370 (NCTC10080_00839) ruvX 846442..846858 (-) 417 WP_001285491.1 Holliday junction resolvase RuvX -
  DQO02_RS04375 (NCTC10080_00840) - 846858..847421 (-) 564 WP_001053171.1 YqgE/AlgH family protein -
  DQO02_RS04380 (NCTC10080_00841) gshB 847637..848584 (-) 948 WP_000593248.1 glutathione synthase -
  DQO02_RS04385 (NCTC10080_00842) rsmE 848604..849335 (-) 732 WP_001675718.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  DQO02_RS04390 (NCTC10080_00843) endA 849412..850119 (-) 708 WP_111763627.1 deoxyribonuclease I -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36128.33 Da        Isoelectric Point: 7.5355

>NTDB_id=1142241 DQO02_RS04360 WP_023202686.1 844601..845581(+) (pilT) [Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10080]
MNMEEIVTLSVKHNVSDLHLCNAWPARWRKQGRMETAPFTAPDVDRLLLDWLNDAQQYQWRTHGQLDFAVSLSGTRRLRA
SAFTHQQGTSLALRLLLERCPDLAEIQTPPIVPALLASENGLILVTGATGCGKSTTLAAMVGHLNQHADKHILTLEDPIE
YRYTSKRCLIQQREIGQHCATFAAGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKEPVRSQLAGSLRAVLSQKLEVDRQDGRVALFELLINTPATGNLIREGKLHQLAHVIQTGQQQGMMTFAQSAQWR
QAQGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=1142241 DQO02_RS04360 WP_023202686.1 844601..845581(+) (pilT) [Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10080]
ATGAATATGGAAGAAATTGTGACGCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGTAACGCCTGGCCTGCGCG
ATGGCGCAAACAAGGACGCATGGAGACAGCGCCTTTTACCGCGCCTGATGTCGACAGGCTTCTGCTTGATTGGCTTAATG
ATGCGCAACAATATCAGTGGCGAACGCACGGCCAGCTTGATTTCGCCGTCTCGCTGTCTGGCACGCGGCGCCTGCGCGCC
AGTGCGTTCACACATCAACAGGGAACGTCGCTGGCGCTACGGCTATTGCTCGAGCGTTGTCCTGATCTGGCGGAAATCCA
GACGCCGCCGATAGTACCCGCACTGCTTGCCAGCGAGAACGGACTGATTCTGGTCACTGGCGCTACTGGCTGCGGGAAAT
CCACCACGTTGGCGGCAATGGTGGGACATCTTAATCAACATGCCGATAAACATATCCTGACGCTGGAAGATCCTATTGAG
TACCGTTACACCAGCAAGCGTTGCCTGATACAGCAGCGGGAAATCGGCCAGCATTGCGCCACTTTTGCCGCCGGGCTGCG
CGCGGCGTTACGTGAAGATCCCGATGTCATTTTACTGGGAGAGCTGCGTGACAGCGAGACCATTCGCCTGGCGCTGACGG
CGGCGGAAACGGGGCATCTGGTACTGGCAACCCTGCATACTCGCGGTGCGGCGCAGGCGGTGGAAAGATTAGTGGATAGT
TTTCCGGCGCAGGAAAAAGAACCGGTACGCAGCCAACTGGCGGGTAGTCTGCGCGCCGTACTATCACAAAAACTGGAGGT
CGACAGACAGGATGGGCGCGTGGCGTTGTTTGAATTACTGATTAATACGCCAGCCACAGGGAATTTGATCCGTGAAGGCA
AACTCCATCAGTTGGCCCACGTGATACAAACCGGGCAGCAGCAGGGGATGATGACATTCGCCCAGAGCGCGCAATGGCGT
CAGGCGCAGGGACGGCTGTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(89-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

48.318

100

0.485
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

48.318

100

0.485
  pilT Neisseria meningitidis 8013

46.951

100

0.472
  pilT Neisseria gonorrhoeae MS11

46.646

100

0.469
  pilT Acinetobacter baylyi ADP1

44.954

100

0.451
  pilT Pseudomonas aeruginosa PAK

44.648

100

0.448
  pilT Acinetobacter baumannii D1279779

44.648

100

0.448
  pilT Acinetobacter baumannii strain A118

44.648

100

0.448
  pilT Pseudomonas stutzeri DSM 10701

44.648

100

0.448
  pilT Acinetobacter nosocomialis M2

44.343

100

0.445
  pilT Legionella pneumophila strain ERS1305867

44.34

97.546

0.433
  pilT Legionella pneumophila strain Lp02

44.34

97.546

0.433
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.824

97.546

0.408
  pilU Vibrio cholerae strain A1552

38.558

97.853

0.377
  pilU Acinetobacter baylyi ADP1

36.842

99.08

0.365
  pilU Pseudomonas stutzeri DSM 10701

35.65

100

0.362

Multiple sequence alignment