Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   DQN83_RS03765 Genome accession   NZ_LS483457
Coordinates   758634..759614 (+) Length   326 a.a.
NCBI ID   WP_023207648.1    Uniprot ID   -
Organism   Salmonella enterica subsp. enterica serovar Sundsvall strain NCTC9787     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 753634..764614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN83_RS03735 (NCTC9787_00734) - 754212..755219 (+) 1008 WP_000252200.1 DUF1202 domain-containing protein -
  DQN83_RS03740 (NCTC9787_00735) hemW 755310..756446 (-) 1137 WP_061377833.1 radical SAM family heme chaperone HemW -
  DQN83_RS03745 (NCTC9787_00736) - 756439..757032 (-) 594 WP_023195148.1 XTP/dITP diphosphatase -
  DQN83_RS03750 (NCTC9787_00737) yggU 757040..757330 (-) 291 WP_001277203.1 DUF167 family protein YggU -
  DQN83_RS03755 (NCTC9787_00738) - 757327..757893 (-) 567 WP_001094848.1 YggT family protein -
  DQN83_RS03760 (NCTC9787_00739) - 757912..758616 (-) 705 WP_000997812.1 YggS family pyridoxal phosphate-dependent enzyme -
  DQN83_RS03765 (NCTC9787_00740) pilT 758634..759614 (+) 981 WP_023207648.1 type IV pilus twitching motility protein PilT Machinery gene
  DQN83_RS03770 (NCTC9787_00741) - 759746..760432 (+) 687 WP_001607997.1 IclR family transcriptional regulator -
  DQN83_RS03775 (NCTC9787_00742) ruvX 760479..760895 (-) 417 WP_000017096.1 Holliday junction resolvase RuvX -
  DQN83_RS03780 (NCTC9787_00743) - 760895..761458 (-) 564 WP_001053171.1 YqgE/AlgH family protein -
  DQN83_RS03785 (NCTC9787_00744) gshB 761674..762621 (-) 948 WP_000593248.1 glutathione synthase -
  DQN83_RS03790 (NCTC9787_00745) rsmE 762641..763372 (-) 732 WP_001222488.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  DQN83_RS03795 (NCTC9787_00746) endA 763449..764156 (-) 708 WP_000286124.1 deoxyribonuclease I -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36177.40 Da        Isoelectric Point: 7.5116

>NTDB_id=1142156 DQN83_RS03765 WP_023207648.1 758634..759614(+) (pilT) [Salmonella enterica subsp. enterica serovar Sundsvall strain NCTC9787]
MNMEEIVTLSVKHNVSDLHLCNAWPARWRKQGRMENAPFTAPDVDRLLLDWLNDAQQYQWRTHGQLDFAVSLSGTRRLRA
SAFIHQQGTSLALRLLPERCPDLAEIQTPPIVPALLASENGLILVTGATGCGKSTTLAAMVGYLNQHADKHILTLEDPIE
YRYTSKRCLIQQREIGQHCATFAAGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKEPIRSQLAGSLRAVLSQKLEVDRQDGRVALFELLINTPATGNLIREGKLHQLAHVIQTGQQQGMMTFAQSAQWR
QAQGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=1142156 DQN83_RS03765 WP_023207648.1 758634..759614(+) (pilT) [Salmonella enterica subsp. enterica serovar Sundsvall strain NCTC9787]
ATGAATATGGAAGAAATTGTGACGCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGTAACGCCTGGCCTGCGCG
ATGGCGCAAACAAGGACGCATGGAGAACGCGCCTTTTACCGCGCCTGATGTCGACAGGCTTCTGCTTGATTGGCTTAATG
ATGCGCAACAATATCAGTGGCGAACGCACGGCCAGCTTGATTTCGCCGTCTCGCTGTCTGGCACGCGGCGCCTGCGCGCC
AGTGCGTTCATACATCAACAGGGAACGTCGCTGGCGCTACGGCTATTGCCCGAGCGTTGTCCTGATCTGGCGGAAATCCA
GACGCCGCCGATAGTACCCGCACTGCTTGCCAGCGAGAACGGACTGATTCTGGTCACTGGCGCTACTGGCTGCGGGAAGT
CCACCACGCTGGCGGCGATGGTGGGATATCTTAATCAACATGCCGATAAACATATCCTGACGCTGGAAGATCCTATTGAA
TACCGTTACACCAGCAAGCGTTGCCTGATACAGCAGCGGGAAATCGGCCAGCATTGCGCCACTTTTGCCGCCGGGCTGCG
CGCGGCGTTACGTGAAGATCCCGATGTCATTTTACTGGGAGAGCTGCGTGACAGCGAGACCATTCGCCTGGCGCTGACGG
CGGCGGAAACTGGGCATCTGGTACTGGCAACCCTGCATACTCGCGGTGCGGCGCAGGCGGTGGAAAGATTAGTGGATAGT
TTTCCGGCGCAGGAAAAAGAACCGATACGCAGTCAACTGGCGGGTAGTCTGCGCGCCGTACTATCACAAAAACTGGAGGT
CGACAGACAGGATGGGCGCGTGGCGTTGTTTGAATTACTGATTAATACGCCAGCCACAGGGAATTTGATCCGTGAAGGCA
AACTCCATCAGTTGGCCCACGTGATACAAACCGGGCAGCAGCAGGGGATGATGACATTCGCCCAGAGCGCGCAATGGCGT
CAGGCGCAGGGACGACTGTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(89-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

48.624

100

0.488
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

48.624

100

0.488
  pilT Neisseria meningitidis 8013

47.866

100

0.482
  pilT Neisseria gonorrhoeae MS11

47.561

100

0.479
  pilT Acinetobacter baumannii D1279779

45.566

100

0.457
  pilT Acinetobacter baumannii strain A118

45.566

100

0.457
  pilT Acinetobacter nosocomialis M2

45.26

100

0.454
  pilT Acinetobacter baylyi ADP1

45.26

100

0.454
  pilT Pseudomonas aeruginosa PAK

44.954

100

0.451
  pilT Pseudomonas stutzeri DSM 10701

44.954

100

0.451
  pilT Legionella pneumophila strain Lp02

44.654

97.546

0.436
  pilT Legionella pneumophila strain ERS1305867

44.654

97.546

0.436
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.138

97.546

0.411
  pilU Vibrio cholerae strain A1552

38.871

97.853

0.38
  pilU Pseudomonas stutzeri DSM 10701

36.254

100

0.368
  pilU Acinetobacter baylyi ADP1

36.842

99.08

0.365

Multiple sequence alignment