Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   DQM55_RS11350 Genome accession   NZ_LS483364
Coordinates   2260508..2261572 (-) Length   354 a.a.
NCBI ID   WP_002899359.1    Uniprot ID   A0A2X3V5M7
Organism   Streptococcus sanguinis strain NCTC11086     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2255508..2266572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM55_RS11325 (NCTC11086_02291) - 2256851..2257339 (-) 489 WP_111676825.1 hypothetical protein -
  DQM55_RS11330 (NCTC11086_02292) - 2257472..2257972 (-) 501 WP_049542296.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  DQM55_RS11335 (NCTC11086_02293) - 2258045..2258503 (-) 459 WP_049542294.1 type II secretion system protein -
  DQM55_RS11340 (NCTC11086_02294) - 2258646..2259155 (-) 510 WP_111676827.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  DQM55_RS11345 (NCTC11086_02295) - 2259278..2260504 (-) 1227 WP_111676829.1 type II secretion system F family protein -
  DQM55_RS11350 (NCTC11086_02296) pilT 2260508..2261572 (-) 1065 WP_002899359.1 type IV pilus twitching motility protein PilT Machinery gene
  DQM55_RS11355 (NCTC11086_02297) - 2261574..2263256 (-) 1683 WP_111676831.1 GspE/PulE family protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 39285.37 Da        Isoelectric Point: 7.0216

>NTDB_id=1138701 DQM55_RS11350 WP_002899359.1 2260508..2261572(-) (pilT) [Streptococcus sanguinis strain NCTC11086]
MNLDELIKQAIEAGASDIHFTVGAEPTMRLHGRLTQLNNTILTNEDTVRFTKHILNEKQIAHLLEVGEVDCAYEVDNGYR
LRVNIFKQKNNCGIALRVIPKDIPSMESLGLPPVIKKLAEKRRGLILVTGPTGSGKSTTLATMINYMNSLRDEHIITIED
PIEYMHTHNKCLVNQRELGADTQSFGNALRGALRQDPDVILVGEMRDKETIEIALRAAETGHLVLSTLHTVGAVNTMDRI
IDVFPAEQQEQIRVQLSAVMEGVVSQQLMRTATGKGRVAAFEIMLGTPAIRNLIREGKTHQLLTPIQTGAQLGMITMDTS
LMGLYRRNVIDQRTLLSYSVDRAQVEKSLGIVGY

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=1138701 DQM55_RS11350 WP_002899359.1 2260508..2261572(-) (pilT) [Streptococcus sanguinis strain NCTC11086]
ATGAATTTGGATGAGTTAATTAAGCAGGCGATTGAAGCGGGTGCATCAGATATCCACTTCACGGTTGGCGCTGAGCCAAC
CATGCGTCTGCACGGGAGGTTAACACAACTCAACAATACAATTTTGACCAACGAAGACACGGTTCGCTTCACCAAGCATA
TTTTAAATGAGAAGCAGATTGCTCATCTTTTAGAAGTCGGTGAAGTGGACTGTGCCTACGAGGTCGACAATGGCTATCGC
TTGCGGGTCAATATCTTTAAGCAGAAAAACAACTGCGGGATTGCCTTGCGGGTCATTCCCAAGGATATTCCATCTATGGA
ATCTCTGGGATTGCCGCCAGTTATTAAAAAGCTGGCTGAGAAACGCCGGGGGCTGATATTGGTTACCGGGCCAACAGGAA
GCGGAAAGTCAACGACCCTGGCAACCATGATCAACTACATGAATAGCTTGCGGGACGAGCACATCATCACAATTGAAGAT
CCGATCGAGTACATGCATACGCATAATAAGTGCTTGGTCAACCAACGTGAGCTGGGAGCGGATACGCAAAGCTTCGGCAA
TGCCCTCCGCGGTGCCCTTCGTCAGGACCCGGATGTCATCCTAGTTGGTGAGATGCGGGATAAAGAAACGATTGAAATCG
CTCTGCGTGCGGCGGAAACAGGTCACTTGGTCCTGTCAACTCTCCACACGGTCGGTGCCGTAAACACCATGGACCGGATT
ATCGACGTATTTCCAGCCGAGCAGCAGGAGCAGATCCGTGTGCAGCTTTCCGCCGTTATGGAAGGCGTTGTATCGCAGCA
GCTTATGCGTACAGCGACCGGCAAAGGTCGTGTAGCTGCCTTTGAAATCATGCTGGGAACACCCGCTATTCGCAACCTCA
TTCGCGAAGGTAAGACCCACCAGTTGCTGACGCCAATCCAAACAGGGGCTCAGCTAGGCATGATTACCATGGACACTTCG
CTCATGGGACTCTATCGTCGCAATGTCATCGACCAAAGAACACTACTGTCCTACTCAGTGGATCGCGCTCAAGTTGAAAA
ATCCCTAGGAATAGTGGGGTACTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(6-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X3V5M7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

51.497

94.35

0.486
  pilT Acinetobacter baumannii D1279779

51.497

94.35

0.486
  pilT Acinetobacter baumannii strain A118

51.497

94.35

0.486
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

50.445

95.198

0.48
  pilT Vibrio cholerae strain A1552

50.445

95.198

0.48
  pilT Legionella pneumophila strain Lp02

50.898

94.35

0.48
  pilT Legionella pneumophila strain ERS1305867

50.898

94.35

0.48
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.267

96.328

0.475
  pilT Pseudomonas aeruginosa PAK

50.301

93.785

0.472
  pilT Pseudomonas stutzeri DSM 10701

50

93.785

0.469
  pilT Acinetobacter baylyi ADP1

49.849

93.503

0.466
  pilT Neisseria meningitidis 8013

49.394

93.22

0.46
  pilT Neisseria gonorrhoeae MS11

49.091

93.22

0.458
  pilU Pseudomonas stutzeri DSM 10701

44.615

91.808

0.41
  pilU Vibrio cholerae strain A1552

41.108

96.893

0.398
  pilU Acinetobacter baylyi ADP1

41.159

92.655

0.381

Multiple sequence alignment