Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   H7A87_RS13620 Genome accession   NZ_LR861805
Coordinates   3187306..3188343 (-) Length   345 a.a.
NCBI ID   WP_104583089.1    Uniprot ID   -
Organism   Xanthomonas sp. CPBF 426 isolate     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3182306..3193343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7A87_RS13595 (XSP_002730) - 3182869..3183408 (+) 540 WP_119127834.1 DNA-3-methyladenine glycosylase I -
  H7A87_RS13600 (XSP_002731) - 3183405..3183995 (+) 591 WP_232087852.1 hypothetical protein -
  H7A87_RS13605 (XSP_002732) - 3184187..3185086 (+) 900 WP_119127832.1 DUF72 domain-containing protein -
  H7A87_RS13610 (XSP_002733) - 3185100..3185774 (-) 675 WP_166765967.1 YitT family protein -
  H7A87_RS13615 (XSP_002734) pilU 3186047..3187177 (-) 1131 WP_016902355.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  H7A87_RS13620 (XSP_002735) pilT 3187306..3188343 (-) 1038 WP_104583089.1 type IV pilus twitching motility protein PilT Machinery gene
  H7A87_RS13625 (XSP_002736) - 3188668..3189360 (+) 693 WP_119127830.1 YggS family pyridoxal phosphate-dependent enzyme -
  H7A87_RS13630 (XSP_002737) proC 3189435..3190289 (+) 855 WP_104583087.1 pyrroline-5-carboxylate reductase -
  H7A87_RS13635 (XSP_002738) - 3190892..3191317 (+) 426 WP_104583086.1 HU family DNA-binding protein -
  H7A87_RS13640 (XSP_002739) - 3191493..3192071 (+) 579 WP_119127829.1 M23 family metallopeptidase -
  H7A87_RS13645 (XSP_002740) - 3192164..3192472 (+) 309 WP_104583084.1 DUF3861 family protein -
  H7A87_RS13650 - 3192749..3193069 (+) 321 WP_119128024.1 hypothetical protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38647.28 Da        Isoelectric Point: 6.6652

>NTDB_id=1132455 H7A87_RS13620 WP_104583089.1 3187306..3188343(-) (pilT) [Xanthomonas sp. CPBF 426 isolate]
MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDVRRINIPALDHKQVHALVYDIMSDKQRRDYEEFLEVDFSFEITSLAR
FRVNAFNQNRGAGAVFRTIPSEVLTLEDLGCPPIFRQLIDQPQGLILVTGPTGSGKSTTLAGMIDYINKNEYGHILTVED
PIEFVHTSQKCLINQREVHRDTHGFNEALRSALREDPDIILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAGEKPMVRSMLSESLRAVISQALLKKVGGGRTAAWEIMVGTPAIRNLIREDKVAQMYSSIQTGQQYGMQTLDQHL
QDLVKRSLITRNQAREYAKDKRIFE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1132455 H7A87_RS13620 WP_104583089.1 3187306..3188343(-) (pilT) [Xanthomonas sp. CPBF 426 isolate]
ATGGATATCGCTGAACTATTGGCGTTTTCTGTCAAGAACAAGGCATCGGACCTGCATCTGTCGGCTGGCTTGCCGCCGAT
GATCCGTGTCGATGGCGATGTCCGTCGCATCAATATTCCGGCCCTGGACCACAAGCAGGTGCACGCGCTGGTCTACGACA
TCATGTCGGACAAGCAGCGTCGCGATTACGAGGAATTCCTCGAGGTCGACTTCTCGTTCGAGATCACGTCGCTGGCGCGC
TTCCGCGTCAATGCCTTCAACCAGAACCGCGGCGCCGGTGCGGTGTTCCGTACCATTCCGTCCGAAGTGCTGACGCTGGA
GGACCTGGGCTGCCCGCCGATCTTCCGCCAGCTGATCGACCAGCCGCAGGGCCTGATCCTGGTCACCGGCCCGACCGGTT
CGGGCAAGTCGACCACGCTCGCCGGCATGATCGACTACATCAACAAGAACGAATACGGCCACATCCTCACCGTCGAGGAT
CCGATCGAATTCGTGCATACCTCGCAGAAGTGCCTGATCAACCAGCGCGAAGTGCACCGCGACACGCACGGCTTCAACGA
GGCGCTGCGCTCGGCGCTGCGCGAAGACCCGGACATCATCCTGGTCGGCGAATTGCGCGACCTGGAAACCATCCGCCTGG
CGTTGACCGCCGCCGAAACCGGCCACCTGGTGTTCGGCACCCTGCACACCAGCTCGGCGGCCAAGACCATCGACCGCATC
ATCGACGTGTTCCCGGCCGGCGAAAAGCCGATGGTGCGCTCGATGCTGTCCGAATCGCTGCGTGCGGTGATTTCGCAGGC
GTTGCTCAAGAAAGTGGGCGGCGGGCGCACCGCCGCCTGGGAAATCATGGTCGGCACCCCGGCCATCCGTAACCTGATCC
GCGAGGACAAGGTGGCGCAGATGTACTCCTCGATCCAGACCGGCCAGCAATACGGCATGCAGACGCTGGACCAGCATCTG
CAGGACCTGGTCAAGCGCAGCCTGATCACGCGCAACCAGGCACGCGAATACGCCAAGGACAAGCGGATATTCGAGTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

79.651

99.71

0.794
  pilT Acinetobacter baumannii D1279779

79.651

99.71

0.794
  pilT Acinetobacter baumannii strain A118

79.651

99.71

0.794
  pilT Pseudomonas stutzeri DSM 10701

79.07

99.71

0.788
  pilT Acinetobacter baylyi ADP1

78.488

99.71

0.783
  pilT Pseudomonas aeruginosa PAK

78.761

98.261

0.774
  pilT Legionella pneumophila strain Lp02

75.291

99.71

0.751
  pilT Legionella pneumophila strain ERS1305867

75.291

99.71

0.751
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

70.821

95.362

0.675
  pilT Vibrio cholerae strain A1552

70.821

95.362

0.675
  pilT Neisseria meningitidis 8013

65.689

98.841

0.649
  pilT Neisseria gonorrhoeae MS11

65.396

98.841

0.646
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.855

100

0.499
  pilU Pseudomonas stutzeri DSM 10701

40.708

98.261

0.4
  pilU Acinetobacter baylyi ADP1

40.294

98.551

0.397
  pilU Vibrio cholerae strain A1552

40.597

97.101

0.394

Multiple sequence alignment