Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | EL022_RS06325 | Genome accession | NZ_LR134173 |
| Coordinates | 1466856..1467962 (+) | Length | 368 a.a. |
| NCBI ID | WP_028381203.1 | Uniprot ID | - |
| Organism | Legionella cherrii strain NCTC11976 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1461856..1472962
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL022_RS06310 (NCTC11976_01310) | - | 1462731..1462952 (-) | 222 | WP_028381206.1 | exodeoxyribonuclease VII small subunit | - |
| EL022_RS06315 (NCTC11976_01311) | radA | 1463135..1464487 (+) | 1353 | WP_028381205.1 | DNA repair protein RadA | - |
| EL022_RS06320 (NCTC11976_01312) | - | 1464717..1466645 (+) | 1929 | WP_241972256.1 | L-gulono-gamma-lactone oxidase | - |
| EL022_RS06325 (NCTC11976_01313) | pilU | 1466856..1467962 (+) | 1107 | WP_028381203.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| EL022_RS06330 (NCTC11976_01314) | ankK | 1468034..1469974 (+) | 1941 | WP_028381202.1 | Dot/Icm T4SS effector AnkK/LegA5 | - |
| EL022_RS06335 (NCTC11976_01315) | - | 1470034..1470339 (-) | 306 | WP_028381201.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 368 a.a. Molecular weight: 41044.18 Da Isoelectric Point: 5.2964
>NTDB_id=1118763 EL022_RS06325 WP_028381203.1 1466856..1467962(+) (pilU) [Legionella cherrii strain NCTC11976]
MDITPFFKLMVDRGASDLFFSVGAPPNIKIEGVISPVGQAPLKSQQMAEIALSLMNDDQRKEFEATMELNMGLSINQVGR
FRINLFRQRGDISMVVRYIKNKIPSIEQLNLPLILKTIVLELRGLVLVVGATGSGKSTTLAAMIDYRNENQSGHILTIED
PIEFIHQHKKSIVDQREVGIDTMSYDNALVNAMREAPDVILIGEIRERNAMKHAIAYAETGHLCISTLHANNANQAMDRI
INFFPEDARKQVLMDLSLNLRAIISMRLVPGVNNQRVAAVELLLNTPYVSDLIEKGKIDDIKEAMERSTEQGMQTFDQAL
LKLYRTGAISKENAIKYADSKNNVGLQIRLNSAGDFDSQDDSLSIEDN
MDITPFFKLMVDRGASDLFFSVGAPPNIKIEGVISPVGQAPLKSQQMAEIALSLMNDDQRKEFEATMELNMGLSINQVGR
FRINLFRQRGDISMVVRYIKNKIPSIEQLNLPLILKTIVLELRGLVLVVGATGSGKSTTLAAMIDYRNENQSGHILTIED
PIEFIHQHKKSIVDQREVGIDTMSYDNALVNAMREAPDVILIGEIRERNAMKHAIAYAETGHLCISTLHANNANQAMDRI
INFFPEDARKQVLMDLSLNLRAIISMRLVPGVNNQRVAAVELLLNTPYVSDLIEKGKIDDIKEAMERSTEQGMQTFDQAL
LKLYRTGAISKENAIKYADSKNNVGLQIRLNSAGDFDSQDDSLSIEDN
Nucleotide
Download Length: 1107 bp
>NTDB_id=1118763 EL022_RS06325 WP_028381203.1 1466856..1467962(+) (pilU) [Legionella cherrii strain NCTC11976]
ATGGACATAACTCCTTTTTTTAAATTAATGGTCGATCGAGGGGCTTCAGATTTGTTTTTTAGTGTGGGTGCACCACCTAA
TATTAAAATTGAAGGAGTTATTTCCCCGGTGGGGCAGGCACCTCTCAAGTCGCAACAAATGGCTGAAATTGCTTTATCAC
TGATGAATGATGATCAGCGTAAAGAATTTGAGGCCACCATGGAGCTGAACATGGGGCTGTCTATTAACCAGGTTGGACGC
TTCAGAATCAATTTATTTCGTCAGCGTGGTGATATTTCAATGGTGGTGCGCTACATCAAAAATAAAATCCCTTCAATTGA
GCAGTTAAATTTACCTCTTATTTTAAAAACAATCGTGTTGGAGTTACGTGGGCTAGTTCTTGTAGTAGGTGCTACCGGTT
CGGGAAAATCAACCACTTTGGCCGCCATGATCGATTATCGCAATGAAAATCAAAGCGGTCATATTTTAACGATTGAAGAT
CCGATAGAATTTATTCATCAACATAAAAAATCCATAGTGGATCAACGTGAAGTAGGCATTGATACCATGAGTTATGATAA
TGCTCTAGTCAATGCAATGCGTGAAGCGCCCGATGTGATTTTAATCGGTGAAATACGGGAGCGTAATGCCATGAAACATG
CTATTGCCTATGCAGAGACAGGGCATTTATGTATTTCAACTTTGCATGCGAATAATGCGAACCAAGCGATGGATCGTATC
ATTAATTTTTTTCCAGAAGACGCACGAAAACAAGTGTTGATGGATTTATCCCTAAATTTGCGAGCTATTATATCGATGCG
GCTGGTCCCAGGGGTGAACAATCAAAGGGTGGCGGCTGTGGAGCTCTTGTTAAACACTCCTTATGTATCTGATTTAATCG
AGAAAGGCAAAATTGATGACATTAAGGAAGCGATGGAGCGTAGTACGGAGCAAGGGATGCAGACCTTCGATCAGGCTTTA
TTAAAATTATATCGAACTGGGGCGATTTCCAAGGAAAATGCGATCAAATATGCTGACTCGAAAAATAATGTGGGTTTACA
AATTCGTTTGAATAGCGCTGGAGATTTTGATTCACAAGATGACAGTTTGAGCATAGAAGATAATTGA
ATGGACATAACTCCTTTTTTTAAATTAATGGTCGATCGAGGGGCTTCAGATTTGTTTTTTAGTGTGGGTGCACCACCTAA
TATTAAAATTGAAGGAGTTATTTCCCCGGTGGGGCAGGCACCTCTCAAGTCGCAACAAATGGCTGAAATTGCTTTATCAC
TGATGAATGATGATCAGCGTAAAGAATTTGAGGCCACCATGGAGCTGAACATGGGGCTGTCTATTAACCAGGTTGGACGC
TTCAGAATCAATTTATTTCGTCAGCGTGGTGATATTTCAATGGTGGTGCGCTACATCAAAAATAAAATCCCTTCAATTGA
GCAGTTAAATTTACCTCTTATTTTAAAAACAATCGTGTTGGAGTTACGTGGGCTAGTTCTTGTAGTAGGTGCTACCGGTT
CGGGAAAATCAACCACTTTGGCCGCCATGATCGATTATCGCAATGAAAATCAAAGCGGTCATATTTTAACGATTGAAGAT
CCGATAGAATTTATTCATCAACATAAAAAATCCATAGTGGATCAACGTGAAGTAGGCATTGATACCATGAGTTATGATAA
TGCTCTAGTCAATGCAATGCGTGAAGCGCCCGATGTGATTTTAATCGGTGAAATACGGGAGCGTAATGCCATGAAACATG
CTATTGCCTATGCAGAGACAGGGCATTTATGTATTTCAACTTTGCATGCGAATAATGCGAACCAAGCGATGGATCGTATC
ATTAATTTTTTTCCAGAAGACGCACGAAAACAAGTGTTGATGGATTTATCCCTAAATTTGCGAGCTATTATATCGATGCG
GCTGGTCCCAGGGGTGAACAATCAAAGGGTGGCGGCTGTGGAGCTCTTGTTAAACACTCCTTATGTATCTGATTTAATCG
AGAAAGGCAAAATTGATGACATTAAGGAAGCGATGGAGCGTAGTACGGAGCAAGGGATGCAGACCTTCGATCAGGCTTTA
TTAAAATTATATCGAACTGGGGCGATTTCCAAGGAAAATGCGATCAAATATGCTGACTCGAAAAATAATGTGGGTTTACA
AATTCGTTTGAATAGCGCTGGAGATTTTGATTCACAAGATGACAGTTTGAGCATAGAAGATAATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
55.618 |
96.739 |
0.538 |
| pilU | Acinetobacter baylyi ADP1 |
52.381 |
97.011 |
0.508 |
| pilU | Vibrio cholerae strain A1552 |
47.354 |
97.554 |
0.462 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
43.658 |
92.12 |
0.402 |
| pilT | Legionella pneumophila strain Lp02 |
42.69 |
92.935 |
0.397 |
| pilT | Legionella pneumophila strain ERS1305867 |
42.69 |
92.935 |
0.397 |
| pilT | Pseudomonas aeruginosa PAK |
41.983 |
93.207 |
0.391 |
| pilT | Neisseria meningitidis 8013 |
41.499 |
94.293 |
0.391 |
| pilT | Neisseria gonorrhoeae MS11 |
41.499 |
94.293 |
0.391 |
| pilT | Acinetobacter nosocomialis M2 |
42.216 |
90.761 |
0.383 |
| pilT | Acinetobacter baumannii D1279779 |
42.216 |
90.761 |
0.383 |
| pilT | Acinetobacter baumannii strain A118 |
42.216 |
90.761 |
0.383 |
| pilT | Pseudomonas stutzeri DSM 10701 |
41.108 |
93.207 |
0.383 |
| pilT | Vibrio cholerae strain A1552 |
42.553 |
89.402 |
0.38 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
42.553 |
89.402 |
0.38 |
| pilT | Acinetobacter baylyi ADP1 |
40 |
92.391 |
0.37 |