Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   LOK39_RS13890 Genome accession   NZ_HG992337
Coordinates   3253203..3254240 (-) Length   345 a.a.
NCBI ID   WP_003489919.1    Uniprot ID   -
Organism   Xanthomonas arboricola strain 1314c isolate 1314c     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3248203..3259240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOK39_RS13865 (XA1314C_27320) ruvX 3248960..3249427 (-) 468 WP_024939388.1 Holliday junction resolvase RuvX -
  LOK39_RS13870 (XA1314C_27330) - 3249420..3249986 (-) 567 WP_011051924.1 YqgE/AlgH family protein -
  LOK39_RS13875 (XA1314C_27340) - 3250322..3250867 (+) 546 WP_047129056.1 DNA-3-methyladenine glycosylase I -
  LOK39_RS13880 (XA1314C_27350) - 3250994..3251668 (-) 675 WP_024940756.1 YitT family protein -
  LOK39_RS13885 (XA1314C_27360) pilU 3251950..3253080 (-) 1131 WP_016902355.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  LOK39_RS13890 (XA1314C_27370) pilT 3253203..3254240 (-) 1038 WP_003489919.1 type IV pilus twitching motility protein PilT Machinery gene
  LOK39_RS13895 (XA1314C_27380) - 3254564..3255256 (+) 693 WP_228599850.1 YggS family pyridoxal phosphate-dependent enzyme -
  LOK39_RS13900 (XA1314C_27390) proC 3255318..3256166 (+) 849 WP_228599851.1 pyrroline-5-carboxylate reductase -
  LOK39_RS13905 (XA1314C_27400) - 3256769..3257194 (+) 426 WP_026064288.1 HU family DNA-binding protein -
  LOK39_RS13910 (XA1314C_27410) - 3257331..3257951 (+) 621 WP_039526211.1 M23 family metallopeptidase -
  LOK39_RS13915 (XA1314C_27420) - 3258044..3258352 (+) 309 WP_016902350.1 DUF3861 family protein -
  LOK39_RS13920 - 3258632..3258952 (+) 321 WP_228599852.1 hypothetical protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38643.30 Da        Isoelectric Point: 6.6652

>NTDB_id=1112311 LOK39_RS13890 WP_003489919.1 3253203..3254240(-) (pilT) [Xanthomonas arboricola strain 1314c isolate 1314c]
MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDVRRINIPALDHKQVHALVYDIMSDKQRRDYEEFLEVDFSFEIPSLAR
FRVNAFNQNRGAGAVFRTIPSEVLTLEDLGCPPIFRQLIDQPQGLILVTGPTGSGKSTTLAGMIDYINKNEYGHILTVED
PIEFVHTSQKCLINQREVHRDTHGFNEALRSALREDPDIILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAGEKPMVRSMLSESLRAVISQALLKKVGGGRTAAWEIMVGTPAIRNLIREDKVAQMYSSIQTGQQYGMQTLDQHL
QDLVKRSLITRNQAREYAKDKRIFE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1112311 LOK39_RS13890 WP_003489919.1 3253203..3254240(-) (pilT) [Xanthomonas arboricola strain 1314c isolate 1314c]
ATGGATATCGCTGAACTATTGGCGTTTTCCGTCAAGAACAAGGCATCGGACCTGCATCTGTCGGCCGGCTTGCCGCCGAT
GATCCGTGTCGATGGCGATGTCCGTCGCATCAATATTCCGGCCCTGGACCACAAGCAGGTGCACGCGCTGGTCTACGACA
TCATGTCGGACAAGCAGCGTCGCGATTACGAGGAATTCCTCGAGGTCGACTTCTCGTTCGAGATTCCGTCGCTGGCGCGC
TTCCGCGTCAATGCGTTCAACCAGAACCGCGGCGCCGGTGCGGTGTTCCGTACCATTCCTTCCGAAGTGCTGACGCTGGA
AGACCTGGGCTGCCCGCCGATCTTTCGCCAGTTGATCGACCAGCCGCAGGGTCTGATCCTGGTTACCGGCCCGACCGGTT
CGGGCAAGTCGACCACGCTCGCCGGCATGATCGACTACATCAACAAGAACGAATACGGCCACATCCTCACGGTCGAGGAT
CCGATCGAATTCGTGCATACCTCGCAAAAGTGCCTGATCAACCAGCGCGAAGTGCACCGCGATACGCACGGTTTCAACGA
GGCGCTGCGCTCGGCGCTGCGCGAAGATCCGGACATCATCCTGGTCGGCGAATTACGCGATCTGGAAACCATCCGCCTGG
CGTTGACTGCCGCCGAAACCGGCCACCTGGTGTTCGGCACCCTGCACACCAGCTCGGCGGCCAAGACCATCGACCGCATC
ATCGACGTGTTCCCGGCCGGCGAAAAGCCGATGGTGCGCTCGATGCTGTCCGAGTCGCTGCGCGCGGTGATTTCGCAGGC
GCTGCTGAAGAAGGTCGGCGGCGGACGCACCGCCGCCTGGGAAATCATGGTCGGCACCCCGGCCATCCGTAACCTGATCC
GCGAGGACAAGGTGGCGCAGATGTATTCGTCGATCCAGACCGGCCAGCAATACGGCATGCAGACGCTGGACCAGCATCTG
CAGGACCTGGTCAAGCGCAGCCTGATCACGCGCAACCAGGCACGCGAGTACGCCAAGGACAAGCGGATATTCGAGTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

79.942

99.71

0.797
  pilT Acinetobacter baumannii D1279779

79.942

99.71

0.797
  pilT Acinetobacter baumannii strain A118

79.942

99.71

0.797
  pilT Pseudomonas stutzeri DSM 10701

79.36

99.71

0.791
  pilT Acinetobacter baylyi ADP1

78.779

99.71

0.786
  pilT Pseudomonas aeruginosa PAK

79.056

98.261

0.777
  pilT Legionella pneumophila strain Lp02

75.291

99.71

0.751
  pilT Legionella pneumophila strain ERS1305867

75.291

99.71

0.751
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

71.125

95.362

0.678
  pilT Vibrio cholerae strain A1552

71.125

95.362

0.678
  pilT Neisseria meningitidis 8013

65.982

98.841

0.652
  pilT Neisseria gonorrhoeae MS11

65.689

98.841

0.649
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.855

100

0.499
  pilU Pseudomonas stutzeri DSM 10701

40.708

98.261

0.4
  pilU Acinetobacter baylyi ADP1

40.294

98.551

0.397
  pilU Vibrio cholerae strain A1552

40.597

97.101

0.394

Multiple sequence alignment