Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | ACLKM4_RS10890 | Genome accession | NZ_CP183895 |
| Coordinates | 2277407..2278444 (+) | Length | 345 a.a. |
| NCBI ID | WP_005179768.1 | Uniprot ID | N9MH18 |
| Organism | Acinetobacter indicus strain D1_NDM_tet(X3) | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2269941..2331983 | 2277407..2278444 | within | 0 |
Gene organization within MGE regions
Location: 2269941..2331983
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACLKM4_RS10870 | - | 2270585..2271835 (+) | 1251 | WP_075175173.1 | exonuclease SbcCD subunit D C-terminal domain-containing protein | - |
| ACLKM4_RS10875 | - | 2271845..2275450 (+) | 3606 | WP_411687949.1 | AAA family ATPase | - |
| ACLKM4_RS10880 | - | 2275454..2276551 (+) | 1098 | WP_180006899.1 | acyltransferase family protein | - |
| ACLKM4_RS10885 | - | 2276597..2277283 (-) | 687 | WP_286409321.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| ACLKM4_RS10890 | pilT | 2277407..2278444 (+) | 1038 | WP_005179768.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| ACLKM4_RS10895 | pilU | 2278472..2279590 (+) | 1119 | WP_005179770.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| ACLKM4_RS10900 | fur | 2279663..2280100 (-) | 438 | WP_005179771.1 | ferric iron uptake transcriptional regulator | - |
| ACLKM4_RS10905 | - | 2280213..2280611 (+) | 399 | WP_005179773.1 | outer membrane protein assembly factor BamE | - |
| ACLKM4_RS10910 | - | 2280654..2280977 (-) | 324 | WP_005179774.1 | RnfH family protein | - |
| ACLKM4_RS10915 | - | 2280977..2282059 (-) | 1083 | WP_127800517.1 | hypothetical protein | - |
| ACLKM4_RS10920 | - | 2282226..2282681 (-) | 456 | WP_168399274.1 | bacteriohemerythrin | - |
| ACLKM4_RS10925 | - | 2282938..2283786 (-) | 849 | WP_411687950.1 | class II glutamine amidotransferase | - |
| ACLKM4_RS10930 | - | 2283873..2284685 (-) | 813 | WP_286414174.1 | GNAT family N-acetyltransferase | - |
| ACLKM4_RS10935 | argB | 2284800..2285702 (-) | 903 | WP_016659457.1 | acetylglutamate kinase | - |
| ACLKM4_RS10940 | - | 2285713..2287137 (-) | 1425 | WP_104488139.1 | phosphomannomutase/phosphoglucomutase | - |
| ACLKM4_RS10945 | dut | 2287321..2287773 (-) | 453 | WP_045796105.1 | dUTP diphosphatase | - |
| ACLKM4_RS10950 | - | 2287805..2289844 (-) | 2040 | WP_005179787.1 | UvrD-helicase domain-containing protein | - |
| ACLKM4_RS10955 | - | 2290001..2291388 (+) | 1388 | WP_419867759.1 | IS3 family transposase | - |
| ACLKM4_RS10960 | - | 2291450..2292100 (-) | 651 | WP_005179792.1 | OmpA family protein | - |
| ACLKM4_RS10965 | - | 2292343..2293263 (+) | 921 | WP_005179793.1 | acyltransferase | - |
| ACLKM4_RS10970 | - | 2293282..2294337 (+) | 1056 | WP_180006904.1 | preprotein translocase subunit SecA | - |
| ACLKM4_RS10975 | minC | 2294459..2295181 (+) | 723 | WP_005179806.1 | septum site-determining protein MinC | - |
| ACLKM4_RS10980 | minD | 2295250..2296062 (+) | 813 | WP_005179808.1 | septum site-determining protein MinD | - |
| ACLKM4_RS10985 | minE | 2296065..2296337 (+) | 273 | WP_005179812.1 | cell division topological specificity factor MinE | - |
| ACLKM4_RS10990 | - | 2296540..2296827 (+) | 288 | WP_005179823.1 | PA4642 family protein | - |
| ACLKM4_RS10995 | - | 2296891..2299950 (-) | 3060 | WP_411687987.1 | DNA translocase FtsK | - |
| ACLKM4_RS11000 | trxB | 2300198..2301154 (+) | 957 | WP_016659465.1 | thioredoxin-disulfide reductase | - |
| ACLKM4_RS11005 | aat | 2301235..2301966 (+) | 732 | WP_411687988.1 | leucyl/phenylalanyl-tRNA--protein transferase | - |
| ACLKM4_RS11010 | - | 2301983..2302798 (+) | 816 | WP_005179833.1 | arginyltransferase | - |
| ACLKM4_RS11015 | rimI | 2302818..2303282 (-) | 465 | WP_286390415.1 | ribosomal protein S18-alanine N-acetyltransferase | - |
| ACLKM4_RS11020 | - | 2303386..2304267 (-) | 882 | WP_045796116.1 | metal-dependent hydrolase | - |
| ACLKM4_RS11025 | tuf | 2304480..2305670 (-) | 1191 | WP_160241040.1 | elongation factor Tu | - |
| ACLKM4_RS11030 | fusA | 2305765..2307900 (-) | 2136 | WP_160241039.1 | elongation factor G | - |
| ACLKM4_RS11035 | rpsG | 2308033..2308503 (-) | 471 | WP_005179845.1 | 30S ribosomal protein S7 | - |
| ACLKM4_RS11040 | rpsL | 2308683..2309057 (-) | 375 | WP_002050319.1 | 30S ribosomal protein S12 | - |
| ACLKM4_RS11045 | - | 2309221..2310672 (-) | 1452 | WP_411687786.1 | EcsC family protein | - |
| ACLKM4_RS11050 | - | 2310949..2312178 (+) | 1230 | WP_005179853.1 | beta-ketoacyl synthase N-terminal-like domain-containing protein | - |
| ACLKM4_RS11055 | - | 2312198..2312650 (+) | 453 | WP_005179856.1 | CopD family protein | - |
| ACLKM4_RS11060 | - | 2312706..2314169 (-) | 1464 | WP_016659472.1 | amino acid permease | - |
| ACLKM4_RS11065 | - | 2314318..2314680 (-) | 363 | WP_005179861.1 | RidA family protein | - |
| ACLKM4_RS11070 | alr | 2314705..2315817 (-) | 1113 | WP_411687785.1 | alanine racemase | - |
| ACLKM4_RS11075 | - | 2315840..2317093 (-) | 1254 | WP_075167990.1 | D-amino acid dehydrogenase | - |
| ACLKM4_RS11080 | - | 2317233..2317700 (+) | 468 | WP_005179867.1 | Lrp/AsnC ligand binding domain-containing protein | - |
| ACLKM4_RS11085 | - | 2317799..2318479 (-) | 681 | WP_045795528.1 | HAD-IA family hydrolase | - |
| ACLKM4_RS11090 | - | 2318572..2319339 (+) | 768 | WP_016659477.1 | hydroxymethylpyrimidine/phosphomethylpyrimidine kinase | - |
| ACLKM4_RS11095 | - | 2319419..2320513 (-) | 1095 | WP_168400278.1 | catalase family protein | - |
| ACLKM4_RS11100 | - | 2320667..2321323 (-) | 657 | WP_016659479.1 | nuclease-related domain-containing protein | - |
| ACLKM4_RS11105 | - | 2321553..2322038 (-) | 486 | WP_005179878.1 | methylated-DNA--[protein]-cysteine S-methyltransferase | - |
| ACLKM4_RS11110 | sugE | 2322072..2322389 (-) | 318 | WP_005179881.1 | quaternary ammonium compound efflux SMR transporter SugE | - |
| ACLKM4_RS11115 | - | 2322701..2323405 (-) | 705 | WP_411687787.1 | copper resistance protein B | - |
| ACLKM4_RS11120 | - | 2323680..2325494 (-) | 1815 | WP_411687784.1 | copper resistance system multicopper oxidase | - |
| ACLKM4_RS11125 | - | 2325536..2326003 (-) | 468 | WP_180056333.1 | hypothetical protein | - |
| ACLKM4_RS11130 | rpe | 2326411..2327097 (-) | 687 | WP_075175405.1 | ribulose-phosphate 3-epimerase | - |
| ACLKM4_RS11135 | - | 2327276..2327560 (+) | 285 | WP_104472524.1 | DUF2218 domain-containing protein | - |
| ACLKM4_RS11140 | - | 2327577..2328614 (-) | 1038 | WP_411687783.1 | M48 family metallopeptidase | - |
| ACLKM4_RS11145 | - | 2328626..2329729 (-) | 1104 | WP_104489531.1 | YjgN family protein | - |
| ACLKM4_RS11150 | fghA | 2329849..2330685 (-) | 837 | WP_104499297.1 | S-formylglutathione hydrolase | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 38237.74 Da Isoelectric Point: 6.5051
>NTDB_id=1106980 ACLKM4_RS10890 WP_005179768.1 2277407..2278444(+) (pilT) [Acinetobacter indicus strain D1_NDM_tet(X3)]
MDITELLAFSAKNGASDLHLSAGMPPLIRVDGEVRRINLPALEHKEVHKLVYDIMNDKQRRDYEDNLETDFSFEVPGVAR
FRVNAFNQNRGAGAVFRTIPSKVLTIEDLGMGQIFRDICDYPRGLVLVTGPTGSGKSTTLAAMIDYINDNRYDHILTVED
PIEFVHQSKKCLVNQREVHRDTHGFNEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
IDVFPAEEKDMVRAMLSESLQAVISQTLLKKNGGGRVAAHEIMIGIPAIRNLIRENKVAQMYSAIQTGANYGMSTLDQSL
KALVSRGVISPQTARTVAKQPESFL
MDITELLAFSAKNGASDLHLSAGMPPLIRVDGEVRRINLPALEHKEVHKLVYDIMNDKQRRDYEDNLETDFSFEVPGVAR
FRVNAFNQNRGAGAVFRTIPSKVLTIEDLGMGQIFRDICDYPRGLVLVTGPTGSGKSTTLAAMIDYINDNRYDHILTVED
PIEFVHQSKKCLVNQREVHRDTHGFNEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
IDVFPAEEKDMVRAMLSESLQAVISQTLLKKNGGGRVAAHEIMIGIPAIRNLIRENKVAQMYSAIQTGANYGMSTLDQSL
KALVSRGVISPQTARTVAKQPESFL
Nucleotide
Download Length: 1038 bp
>NTDB_id=1106980 ACLKM4_RS10890 WP_005179768.1 2277407..2278444(+) (pilT) [Acinetobacter indicus strain D1_NDM_tet(X3)]
ATGGATATTACAGAACTATTGGCCTTTTCGGCAAAAAATGGGGCATCGGATTTACACCTGTCGGCAGGCATGCCGCCACT
GATTCGTGTGGATGGTGAAGTACGCCGCATCAATTTGCCCGCCTTGGAACATAAAGAAGTCCACAAGCTGGTCTATGACA
TCATGAACGACAAACAGCGCCGTGATTATGAAGATAACCTGGAAACCGACTTCTCGTTTGAAGTCCCGGGCGTGGCGCGT
TTCCGTGTTAACGCATTTAACCAGAACCGCGGTGCCGGCGCGGTGTTTCGTACCATTCCCTCTAAAGTGCTGACCATTGA
AGATTTGGGAATGGGTCAAATCTTTAGAGATATCTGTGACTATCCACGTGGTCTAGTGCTGGTCACGGGGCCGACGGGTT
CGGGTAAATCCACCACCCTGGCGGCGATGATTGACTATATCAATGACAATCGCTATGACCACATCCTGACCGTGGAAGAC
CCGATTGAATTTGTGCATCAGTCTAAAAAATGTCTGGTCAACCAGCGTGAAGTACATCGTGATACCCACGGCTTTAATGA
AGCACTACGTTCGGCGCTGCGTGAAGACCCGGATATTATTTTGGTCGGTGAGATGCGTGACCTGGAAACCATCCGTTTGG
CACTTACCGCGGCAGAAACCGGTCACCTGGTCTTTGGTACCCTGCATACCACCTCGGCGGCAAAAACCATTGACCGTGTG
ATTGACGTCTTTCCAGCCGAAGAAAAAGATATGGTGCGTGCCATGCTGTCTGAATCTTTACAGGCGGTCATTTCACAAAC
CCTGCTCAAGAAAAATGGCGGTGGCCGTGTGGCGGCGCATGAAATCATGATCGGGATTCCGGCCATCCGTAACCTGATTC
GTGAAAACAAGGTTGCACAGATGTACTCGGCCATTCAAACCGGTGCCAACTACGGTATGAGTACGCTGGACCAGAGCCTG
AAAGCCCTGGTCAGCCGTGGCGTGATCAGTCCACAGACCGCGCGTACTGTGGCGAAACAGCCAGAATCGTTCCTCTAA
ATGGATATTACAGAACTATTGGCCTTTTCGGCAAAAAATGGGGCATCGGATTTACACCTGTCGGCAGGCATGCCGCCACT
GATTCGTGTGGATGGTGAAGTACGCCGCATCAATTTGCCCGCCTTGGAACATAAAGAAGTCCACAAGCTGGTCTATGACA
TCATGAACGACAAACAGCGCCGTGATTATGAAGATAACCTGGAAACCGACTTCTCGTTTGAAGTCCCGGGCGTGGCGCGT
TTCCGTGTTAACGCATTTAACCAGAACCGCGGTGCCGGCGCGGTGTTTCGTACCATTCCCTCTAAAGTGCTGACCATTGA
AGATTTGGGAATGGGTCAAATCTTTAGAGATATCTGTGACTATCCACGTGGTCTAGTGCTGGTCACGGGGCCGACGGGTT
CGGGTAAATCCACCACCCTGGCGGCGATGATTGACTATATCAATGACAATCGCTATGACCACATCCTGACCGTGGAAGAC
CCGATTGAATTTGTGCATCAGTCTAAAAAATGTCTGGTCAACCAGCGTGAAGTACATCGTGATACCCACGGCTTTAATGA
AGCACTACGTTCGGCGCTGCGTGAAGACCCGGATATTATTTTGGTCGGTGAGATGCGTGACCTGGAAACCATCCGTTTGG
CACTTACCGCGGCAGAAACCGGTCACCTGGTCTTTGGTACCCTGCATACCACCTCGGCGGCAAAAACCATTGACCGTGTG
ATTGACGTCTTTCCAGCCGAAGAAAAAGATATGGTGCGTGCCATGCTGTCTGAATCTTTACAGGCGGTCATTTCACAAAC
CCTGCTCAAGAAAAATGGCGGTGGCCGTGTGGCGGCGCATGAAATCATGATCGGGATTCCGGCCATCCGTAACCTGATTC
GTGAAAACAAGGTTGCACAGATGTACTCGGCCATTCAAACCGGTGCCAACTACGGTATGAGTACGCTGGACCAGAGCCTG
AAAGCCCTGGTCAGCCGTGGCGTGATCAGTCCACAGACCGCGCGTACTGTGGCGAAACAGCCAGAATCGTTCCTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Acinetobacter nosocomialis M2 |
94.783 |
100 |
0.948 |
| pilT | Acinetobacter baumannii D1279779 |
94.493 |
100 |
0.945 |
| pilT | Acinetobacter baumannii strain A118 |
94.493 |
100 |
0.945 |
| pilT | Acinetobacter baylyi ADP1 |
86.919 |
99.71 |
0.867 |
| pilT | Pseudomonas stutzeri DSM 10701 |
84.012 |
99.71 |
0.838 |
| pilT | Pseudomonas aeruginosa PAK |
83.721 |
99.71 |
0.835 |
| pilT | Legionella pneumophila strain Lp02 |
74.128 |
99.71 |
0.739 |
| pilT | Legionella pneumophila strain ERS1305867 |
74.128 |
99.71 |
0.739 |
| pilT | Neisseria meningitidis 8013 |
68.116 |
100 |
0.681 |
| pilT | Neisseria gonorrhoeae MS11 |
67.826 |
100 |
0.678 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
69.048 |
97.391 |
0.672 |
| pilT | Vibrio cholerae strain A1552 |
69.048 |
97.391 |
0.672 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
51.884 |
100 |
0.519 |
| pilU | Vibrio cholerae strain A1552 |
42.09 |
97.101 |
0.409 |
| pilU | Pseudomonas stutzeri DSM 10701 |
41.194 |
97.101 |
0.4 |
| pilU | Acinetobacter baylyi ADP1 |
37.861 |
100 |
0.38 |