Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ACMXYJ_RS05980 | Genome accession | NZ_CP180480 |
| Coordinates | 1301003..1301410 (+) | Length | 135 a.a. |
| NCBI ID | WP_415759102.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. LT1P18 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1296003..1306410
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACMXYJ_RS05955 | yacG | 1296168..1296368 (-) | 201 | WP_140681081.1 | DNA gyrase inhibitor YacG | - |
| ACMXYJ_RS05960 | coaE | 1296365..1296988 (-) | 624 | WP_415759098.1 | dephospho-CoA kinase | - |
| ACMXYJ_RS05965 | pilD | 1296985..1297857 (-) | 873 | WP_415759099.1 | prepilin peptidase | Machinery gene |
| ACMXYJ_RS05970 | pilC | 1297859..1299076 (-) | 1218 | WP_415759100.1 | type II secretion system F family protein | Machinery gene |
| ACMXYJ_RS05975 | pilB | 1299079..1300776 (-) | 1698 | WP_415759101.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACMXYJ_RS05980 | pilA | 1301003..1301410 (+) | 408 | WP_415759102.1 | pilin | Machinery gene |
| ACMXYJ_RS05985 | - | 1301725..1302081 (+) | 357 | WP_415759103.1 | BON domain-containing protein | - |
| ACMXYJ_RS05990 | - | 1302274..1302570 (-) | 297 | WP_123367810.1 | DUF2845 domain-containing protein | - |
| ACMXYJ_RS05995 | - | 1302570..1305521 (-) | 2952 | WP_415759104.1 | DUF748 domain-containing protein | - |
Sequence
Protein
Download Length: 135 a.a. Molecular weight: 13896.16 Da Isoelectric Point: 8.1079
>NTDB_id=1096069 ACMXYJ_RS05980 WP_415759102.1 1301003..1301410(+) (pilA) [Pseudomonas sp. LT1P18]
MKTQKGFTLIELLIVVAIIGILATFALPQYSKYQARAKVTAGLAEITALKVPFEDLMNQGTNPDLATVGGTLTTSNCTTT
VAGVATDGTGTIGCTILNAPGPVLSKTITLTRALTGWTCATTVAQEYSPKGCTGV
MKTQKGFTLIELLIVVAIIGILATFALPQYSKYQARAKVTAGLAEITALKVPFEDLMNQGTNPDLATVGGTLTTSNCTTT
VAGVATDGTGTIGCTILNAPGPVLSKTITLTRALTGWTCATTVAQEYSPKGCTGV
Nucleotide
Download Length: 408 bp
>NTDB_id=1096069 ACMXYJ_RS05980 WP_415759102.1 1301003..1301410(+) (pilA) [Pseudomonas sp. LT1P18]
ATGAAGACTCAAAAAGGTTTTACCCTGATCGAGCTGCTGATCGTGGTGGCGATCATCGGGATTCTGGCGACGTTTGCGTT
GCCGCAGTACTCCAAGTATCAGGCCCGGGCCAAGGTAACTGCCGGGCTTGCAGAGATTACGGCGTTGAAGGTTCCGTTTG
AGGACCTTATGAATCAAGGGACCAATCCGGATCTGGCAACCGTCGGCGGAACCCTCACGACCTCCAACTGCACAACCACA
GTCGCTGGGGTCGCGACTGATGGTACCGGTACGATCGGATGCACGATTCTCAACGCGCCGGGACCGGTTCTGAGTAAAAC
AATCACGCTGACGCGTGCGCTGACTGGCTGGACGTGTGCCACCACCGTTGCTCAGGAATACTCGCCTAAAGGCTGCACAG
GCGTCTGA
ATGAAGACTCAAAAAGGTTTTACCCTGATCGAGCTGCTGATCGTGGTGGCGATCATCGGGATTCTGGCGACGTTTGCGTT
GCCGCAGTACTCCAAGTATCAGGCCCGGGCCAAGGTAACTGCCGGGCTTGCAGAGATTACGGCGTTGAAGGTTCCGTTTG
AGGACCTTATGAATCAAGGGACCAATCCGGATCTGGCAACCGTCGGCGGAACCCTCACGACCTCCAACTGCACAACCACA
GTCGCTGGGGTCGCGACTGATGGTACCGGTACGATCGGATGCACGATTCTCAACGCGCCGGGACCGGTTCTGAGTAAAAC
AATCACGCTGACGCGTGCGCTGACTGGCTGGACGTGTGCCACCACCGTTGCTCAGGAATACTCGCCTAAAGGCTGCACAG
GCGTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Acinetobacter baumannii strain A118 |
47.826 |
100 |
0.489 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
45.833 |
100 |
0.489 |
| pilA | Vibrio cholerae strain A1552 |
45.833 |
100 |
0.489 |
| pilA | Vibrio cholerae C6706 |
45.833 |
100 |
0.489 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
45.324 |
100 |
0.467 |
| pilA | Pseudomonas aeruginosa PAK |
40.268 |
100 |
0.444 |
| comP | Acinetobacter baylyi ADP1 |
38.562 |
100 |
0.437 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
42.222 |
100 |
0.422 |
| pilA2 | Legionella pneumophila str. Paris |
40.146 |
100 |
0.407 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
39.416 |
100 |
0.4 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
38.519 |
100 |
0.385 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
43.333 |
88.889 |
0.385 |