Detailed information NTG1096066

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACMXYJ_RS05965
• Genome accession: NZ_CP180480
• Coordinates: 1296985..1297857 (-)
• Length: 290 a.a.
• NCBI ID: WP_415759099.1
• Uniprot ID: -
• Organism: Pseudomonas sp. LT1P18
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1291985..1302857

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACMXYJ_RS05930	-	1293353..1293802 (+)	450	WP_415760683.1	methyl-accepting chemotaxis protein	-
ACMXYJ_RS05935	-	1293823..1294065 (-)	243	WP_415759095.1	DUF2790 domain-containing protein	-
ACMXYJ_RS05940	-	1294187..1295119 (+)	933	WP_415759096.1	LysR family transcriptional regulator	-
ACMXYJ_RS05945	-	1295196..1295885 (+)	690	WP_415759097.1	energy-coupling factor ABC transporter permease	-
ACMXYJ_RS05950	-	1295949..1296164 (+)	216	WP_033054332.1	hypothetical protein	-
ACMXYJ_RS05955	yacG	1296168..1296368 (-)	201	WP_140681081.1	DNA gyrase inhibitor YacG	-
ACMXYJ_RS05960	coaE	1296365..1296988 (-)	624	WP_415759098.1	dephospho-CoA kinase	-
ACMXYJ_RS05965	pilD	1296985..1297857 (-)	873	WP_415759099.1	prepilin peptidase	Machinery gene
ACMXYJ_RS05970	pilC	1297859..1299076 (-)	1218	WP_415759100.1	type II secretion system F family protein	Machinery gene
ACMXYJ_RS05975	pilB	1299079..1300776 (-)	1698	WP_415759101.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACMXYJ_RS05980	pilA	1301003..1301410 (+)	408	WP_415759102.1	pilin	Machinery gene
ACMXYJ_RS05985	-	1301725..1302081 (+)	357	WP_415759103.1	BON domain-containing protein	-
ACMXYJ_RS05990	-	1302274..1302570 (-)	297	WP_123367810.1	DUF2845 domain-containing protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32219.52 Da
• Isoelectric Point: 7.9920

>NTDB_id=1096066 ACMXYJ_RS05965 WP_415759099.1 1296985..1297857(-) (pilD) [Pseudomonas sp. LT1P18]
MPLNDILTLHPLTFVIAALLVGLLIGSFLNVVVWRLPKMLDREWREEAREVLGLPGETPLPTFNLMLPHSQCPQCGHRIR
AWENIPVLSYLLLRGRCSNCTAAISKRYPLTELACGLLSAFIAWHFGFGWQACMALVLSWGLLTMSLIDAEHQLLPDVLV
LPLIWLGLIVNSFGLFVSLHEALWGAVAGYMALWSVFWLFKLITGKDGMGHGDFKLLAMFGAWGGWQILPLTILLSSMVG
AVVGVILLRLRNAKTSTPIPFGPFLAIAGWIALLWGGQITDFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=1096066 ACMXYJ_RS05965 WP_415759099.1 1296985..1297857(-) (pilD) [Pseudomonas sp. LT1P18]
ATGCCCTTGAACGACATTCTGACCCTCCACCCGTTGACCTTCGTGATCGCCGCCCTGTTGGTCGGCCTGCTGATCGGCAG
CTTTCTCAACGTGGTGGTCTGGCGCCTGCCAAAAATGCTTGATCGCGAATGGCGTGAGGAGGCTCGTGAAGTGTTGGGCT
TGCCAGGCGAAACACCGCTGCCAACCTTCAACCTGATGCTGCCCCATTCCCAGTGCCCACAGTGCGGCCATCGAATCCGC
GCCTGGGAAAATATTCCGGTGCTCAGTTATCTGCTCTTGCGGGGTCGATGCTCGAACTGCACGGCAGCCATCAGCAAACG
CTACCCGCTGACCGAACTGGCCTGCGGTCTGCTCTCGGCGTTCATCGCCTGGCATTTCGGTTTCGGCTGGCAGGCCTGCA
TGGCGCTGGTTCTGAGCTGGGGGTTGCTGACCATGAGCCTGATCGATGCCGAGCACCAACTGCTGCCGGATGTGCTGGTG
CTGCCGCTGATATGGCTGGGGCTGATCGTCAACAGCTTCGGACTTTTCGTGTCCTTGCATGAAGCGTTGTGGGGCGCGGT
GGCCGGCTATATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGATCACCGGCAAGGACGGCATGGGCCACGGTGATT
TCAAGTTGTTAGCGATGTTCGGCGCCTGGGGTGGCTGGCAGATCTTGCCACTGACCATCCTGTTATCGTCGATGGTGGGC
GCCGTTGTCGGCGTGATTTTGCTGCGATTGCGCAACGCGAAAACCTCCACGCCGATCCCCTTCGGACCCTTTCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.418	97.241	0.5
pilD	Vibrio campbellii strain DS40M4	50.709	97.241	0.493
pilD	Neisseria gonorrhoeae MS11	49.63	93.103	0.462
pilD	Acinetobacter baumannii D1279779	49.446	93.448	0.462
pilD	Acinetobacter nosocomialis M2	48.708	93.448	0.455