Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACMXYJ_RS05970 Genome accession   NZ_CP180480
Coordinates   1297859..1299076 (-) Length   405 a.a.
NCBI ID   WP_415759100.1    Uniprot ID   -
Organism   Pseudomonas sp. LT1P18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1292859..1304076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYJ_RS05930 - 1293353..1293802 (+) 450 WP_415760683.1 methyl-accepting chemotaxis protein -
  ACMXYJ_RS05935 - 1293823..1294065 (-) 243 WP_415759095.1 DUF2790 domain-containing protein -
  ACMXYJ_RS05940 - 1294187..1295119 (+) 933 WP_415759096.1 LysR family transcriptional regulator -
  ACMXYJ_RS05945 - 1295196..1295885 (+) 690 WP_415759097.1 energy-coupling factor ABC transporter permease -
  ACMXYJ_RS05950 - 1295949..1296164 (+) 216 WP_033054332.1 hypothetical protein -
  ACMXYJ_RS05955 yacG 1296168..1296368 (-) 201 WP_140681081.1 DNA gyrase inhibitor YacG -
  ACMXYJ_RS05960 coaE 1296365..1296988 (-) 624 WP_415759098.1 dephospho-CoA kinase -
  ACMXYJ_RS05965 pilD 1296985..1297857 (-) 873 WP_415759099.1 prepilin peptidase Machinery gene
  ACMXYJ_RS05970 pilC 1297859..1299076 (-) 1218 WP_415759100.1 type II secretion system F family protein Machinery gene
  ACMXYJ_RS05975 pilB 1299079..1300776 (-) 1698 WP_415759101.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACMXYJ_RS05980 pilA 1301003..1301410 (+) 408 WP_415759102.1 pilin Machinery gene
  ACMXYJ_RS05985 - 1301725..1302081 (+) 357 WP_415759103.1 BON domain-containing protein -
  ACMXYJ_RS05990 - 1302274..1302570 (-) 297 WP_123367810.1 DUF2845 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44305.17 Da        Isoelectric Point: 9.8357

>NTDB_id=1096067 ACMXYJ_RS05970 WP_415759100.1 1297859..1299076(-) (pilC) [Pseudomonas sp. LT1P18]
MAVKAAKISVYAWEGTDRKGTRMTGELSGQNPALIKAQLRKQGITPGKVRKKSTSIFNLGKRIKAQDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPAMRTLVDEVKQEVAAGNSFAASLRKKPKYFDELYCNLVDAGEQAGALDTLLERVATYKEKS
ESLKAKIKKAMTYPLAVVFVAIIVTGILLVKVVPQFESVFKGFGAELPAFTVMVIGLSEFMQDWWWAMLGVLIAAIFGVR
HAFKTSQAFRDRMDTWLLKLPLIGTLMYKSAVARYARTLSTTFAAGVPLVEALDSVAGATGNIVFKRAVLRIKQDVSTGM
QLNFSMRASGIFPNMAIQMTAIGEESGALDDMLDKVASFYEDEVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGTAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1096067 ACMXYJ_RS05970 WP_415759100.1 1297859..1299076(-) (pilC) [Pseudomonas sp. LT1P18]
ATGGCGGTCAAAGCAGCAAAAATCAGCGTCTATGCCTGGGAAGGCACAGACCGCAAAGGCACCAGAATGACGGGCGAATT
GAGCGGTCAGAACCCGGCGTTGATCAAGGCCCAATTGCGCAAGCAGGGCATCACCCCCGGCAAGGTACGCAAGAAGTCCA
CCTCGATTTTCAACCTGGGCAAGCGCATCAAGGCCCAGGACATTGCCCTGTTCACCCGGCAAATGGCGACCATGATGAAA
GCCGGTGTGCCGCTGTTGCAGTCCTTCGACATCATCGGTGAGGGCTTCGATAACCCGGCCATGCGCACACTGGTCGACGA
GGTGAAGCAGGAAGTCGCGGCGGGTAACAGTTTCGCCGCGTCGTTGCGCAAAAAGCCTAAATACTTCGATGAGCTCTACT
GCAACCTGGTCGATGCCGGTGAGCAGGCTGGTGCCCTCGATACCCTGCTGGAGAGAGTGGCGACCTATAAGGAAAAGAGC
GAAAGCCTCAAGGCCAAGATCAAGAAAGCCATGACCTACCCACTGGCAGTGGTGTTCGTCGCGATCATTGTGACCGGGAT
TCTGCTGGTCAAAGTGGTGCCGCAGTTCGAATCGGTATTCAAAGGGTTTGGCGCCGAATTGCCAGCCTTCACGGTGATGG
TCATCGGCCTCTCGGAGTTCATGCAGGACTGGTGGTGGGCGATGCTCGGCGTGCTGATCGCGGCCATCTTCGGTGTGCGC
CACGCGTTTAAAACGTCGCAAGCCTTTCGGGACCGAATGGACACCTGGCTGCTGAAACTGCCGCTGATTGGCACGCTGAT
GTACAAGTCGGCCGTGGCCCGTTACGCCCGCACGCTGTCGACGACCTTTGCGGCAGGAGTGCCGCTGGTGGAAGCCCTGG
ATTCGGTGGCCGGCGCTACCGGCAACATCGTGTTCAAGCGCGCGGTGCTGCGCATCAAGCAGGACGTATCGACCGGTATG
CAGCTGAATTTTTCCATGCGCGCCTCCGGTATCTTTCCGAACATGGCGATCCAGATGACCGCGATTGGCGAAGAGTCCGG
CGCGCTGGACGATATGCTCGACAAGGTCGCGAGCTTCTATGAGGACGAAGTGGACAACATGGTCGATAACCTCACCAGTC
TGATGGAGCCGTTCATCATGGTGGTGCTGGGTGTTATCGTCGGAGGCCTGGTGGTTGCGATGTACCTGCCCATCTTCCAA
CTCGGCACAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

72.346

100

0.723
  pilC Acinetobacter baylyi ADP1

59.804

100

0.602
  pilC Acinetobacter baumannii D1279779

58.333

100

0.588
  pilC Legionella pneumophila strain ERS1305867

53.788

97.778

0.526
  pilG Neisseria gonorrhoeae MS11

43.284

99.259

0.43
  pilG Neisseria meningitidis 44/76-A

42.786

99.259

0.425
  pilC Vibrio cholerae strain A1552

43.112

96.79

0.417
  pilC Vibrio campbellii strain DS40M4

40.547

99.259

0.402
  pilC Thermus thermophilus HB27

38.404

99.012

0.38

Multiple sequence alignment