Detailed information NTG1096011

Bioinformatically predicted

Overview

• Name: pilT
• Type: Machinery gene
• Locus tag: ACMYQ1_RS10275
• Genome accession: NZ_CP180478
• Coordinates: 2374583..2375599 (+)
• Length: 338 a.a.
• NCBI ID: WP_415776359.1
• Uniprot ID: -
• Organism: Shewanella oncorhynchi strain XWfb1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2369583..2380599

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACMYQ1_RS10260 (ACMYQ1_10260)	-	2371701..2372513 (+)	813	WP_415776356.1	alpha/beta hydrolase	-
ACMYQ1_RS10265 (ACMYQ1_10265)	-	2372619..2373041 (-)	423	WP_415776357.1	hypothetical protein	-
ACMYQ1_RS10270 (ACMYQ1_10270)	-	2374152..2374460 (+)	309	WP_415776358.1	hypothetical protein	-
ACMYQ1_RS10275 (ACMYQ1_10275)	pilT	2374583..2375599 (+)	1017	WP_415776359.1	type IV pilus twitching motility protein PilT	Machinery gene
ACMYQ1_RS10280 (ACMYQ1_10280)	-	2376099..2376846 (-)	748	Protein_2013	ISAs1 family transposase	-
ACMYQ1_RS10285 (ACMYQ1_10285)	-	2377630..2378223 (+)	594	WP_415776360.1	fimbrial protein	-

Sequence

Protein

• Length: 338 a.a.
• Molecular weight: 37829.69 Da
• Isoelectric Point: 8.0896

>NTDB_id=1096011 ACMYQ1_RS10275 WP_415776359.1 2374583..2375599(+) (pilT) [Shewanella oncorhynchi strain XWfb1]
MDIIQLLLFGVKNKASDLHLASGSPPMIRVDGEIRRINLPKLDSELIHRLVYDVMNDNQIKFFEEFLEIDFSFEVPSLAR
FRVNVFNQYLGISAVFRTIPCDIYSLEDLGAPKIFKNIASYPRGLVLVTGPTGSGKSTTLAAMINSINQSRYEHILTIED
PIEFTYKNERSLINQREVNKHTKSFSAALRSALREDPDVILIGEMRDLETIRLAITAAETGHLVFGTLHTSSAARTINRI
VDVFPAGEKNMIRNMLSESLQAIVSQTLLKKINGGRIAAHEILIVNAAVRNLIREDKVAQIYSTMQTSSLDGMQTLEQDL
LRLVKSNVISSEVAKSKK

Nucleotide

• Length: 1017 bp

>NTDB_id=1096011 ACMYQ1_RS10275 WP_415776359.1 2374583..2375599(+) (pilT) [Shewanella oncorhynchi strain XWfb1]
GTGGATATTATACAGTTGCTTTTATTTGGTGTAAAAAATAAGGCTTCAGACTTGCATTTAGCATCAGGGTCTCCTCCGAT
GATTAGGGTTGATGGAGAGATACGTAGAATTAATTTGCCAAAGTTAGACAGTGAATTAATACATAGATTGGTTTATGACG
TGATGAATGATAATCAAATAAAATTTTTTGAGGAATTTCTTGAGATTGATTTTTCATTTGAAGTGCCAAGTTTGGCTAGA
TTTAGAGTGAATGTTTTTAATCAATACCTTGGTATTTCGGCAGTGTTTAGAACAATACCTTGTGACATATATTCGCTTGA
AGATCTTGGTGCACCAAAAATATTTAAAAATATAGCTTCATATCCTCGCGGATTAGTATTGGTAACAGGGCCAACAGGCT
CTGGGAAAAGCACTACACTTGCTGCAATGATAAACTCTATTAATCAATCACGATATGAGCATATTCTGACTATTGAAGAC
CCAATAGAATTTACCTATAAAAATGAGCGTAGTCTAATTAATCAGCGTGAAGTAAACAAGCATACTAAGTCATTTTCTGC
TGCATTGCGAAGTGCTTTACGTGAAGATCCTGATGTAATTCTTATTGGTGAGATGCGAGACTTAGAGACTATACGGTTAG
CGATAACAGCAGCAGAAACTGGTCATTTGGTTTTTGGTACTTTACATACATCTTCTGCTGCTAGAACGATAAATAGAATT
GTTGACGTTTTCCCTGCTGGAGAGAAAAATATGATTAGGAATATGTTGTCTGAATCACTTCAGGCCATAGTTTCTCAAAC
TTTACTAAAAAAAATTAATGGTGGTCGTATCGCAGCCCACGAAATTTTGATAGTAAATGCTGCTGTAAGAAATTTAATTC
GTGAAGATAAAGTCGCACAAATATATTCAACAATGCAAACAAGTTCGTTGGATGGAATGCAAACATTAGAACAGGATTTG
TTAAGGTTAGTTAAGTCTAATGTTATAAGTTCAGAAGTGGCTAAGTCAAAGAAGTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (11-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilT	Acinetobacter baumannii strain A118	68.155	99.408	0.678
pilT	Acinetobacter baumannii D1279779	68.155	99.408	0.678
pilT	Acinetobacter nosocomialis M2	68.155	99.408	0.678
pilT	Acinetobacter baylyi ADP1	67.56	99.408	0.672
pilT	Pseudomonas stutzeri DSM 10701	67.359	99.704	0.672
pilT	Legionella pneumophila strain ERS1305867	67.964	98.817	0.672
pilT	Legionella pneumophila strain Lp02	67.964	98.817	0.672
pilT	Pseudomonas aeruginosa PAK	66.766	99.704	0.666
pilT	Neisseria meningitidis 8013	65.385	100	0.654
pilT	Neisseria gonorrhoeae MS11	64.793	100	0.648
pilT	Vibrio cholerae O1 biovar El Tor strain E7946	62.018	99.704	0.618
pilT	Vibrio cholerae strain A1552	62.018	99.704	0.618
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	50.755	97.929	0.497
pilU	Pseudomonas stutzeri DSM 10701	40.896	99.112	0.405
pilU	Acinetobacter baylyi ADP1	40.964	98.225	0.402
pilU	Vibrio cholerae strain A1552	40.597	99.112	0.402