Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   ACMGGS_RS01960 Genome accession   NZ_CP179893
Coordinates   411691..412668 (-) Length   325 a.a.
NCBI ID   WP_414164828.1    Uniprot ID   -
Organism   Superficieibacter sp. BNK-5     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 406691..417668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMGGS_RS01935 (ACMGGS_01935) - 406778..407341 (+) 564 WP_414164823.1 YqgE/AlgH family protein -
  ACMGGS_RS01940 (ACMGGS_01940) ruvX 407341..407757 (+) 417 WP_414164824.1 Holliday junction resolvase RuvX -
  ACMGGS_RS01945 (ACMGGS_01945) - 407754..408434 (-) 681 WP_414164825.1 LuxR C-terminal-related transcriptional regulator -
  ACMGGS_RS01950 (ACMGGS_01950) - 408676..409365 (-) 690 WP_414164826.1 IclR family transcriptional regulator -
  ACMGGS_RS01955 (ACMGGS_01955) - 409436..411694 (+) 2259 WP_414164827.1 FAD-dependent oxidoreductase -
  ACMGGS_RS01960 (ACMGGS_01960) pilT 411691..412668 (-) 978 WP_414164828.1 type IV pilus twitching motility protein PilT Machinery gene
  ACMGGS_RS01965 (ACMGGS_01965) - 412686..413390 (+) 705 WP_414164829.1 YggS family pyridoxal phosphate-dependent enzyme -
  ACMGGS_RS01970 (ACMGGS_01970) - 413409..413975 (+) 567 WP_414164830.1 YggT family protein -
  ACMGGS_RS01975 (ACMGGS_01975) yggU 413972..414262 (+) 291 WP_414164831.1 DUF167 family protein YggU -
  ACMGGS_RS01980 (ACMGGS_01980) - 414270..414863 (+) 594 WP_414164832.1 XTP/dITP diphosphatase -
  ACMGGS_RS01985 (ACMGGS_01985) hemW 414856..415992 (+) 1137 WP_414166182.1 radical SAM family heme chaperone HemW -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 35594.84 Da        Isoelectric Point: 6.4345

>NTDB_id=1093431 ACMGGS_RS01960 WP_414164828.1 411691..412668(-) (pilT) [Superficieibacter sp. BNK-5]
MDMEEIVALSVKHNVSDLHLCNAWPPRWRRSGKLEPAPFASMDVEKVLNDCLDEAQMAQFTRGQVDFAITLPCQQRLRAS
AFIHRQGASLALRLLPTETPHLADLGVPAALPELLNEESGLILVTGATGSGKSTTLAAMVDHLNHHLDGHILTLEDPIEF
VHRSQRCLIQQREVGRHTDSFAAALRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDVF
PAQEKEQVRSQLAGSLCAVVAQKLQCSPQNTRVALFEMLINTPAVANLIREGKTHQLPGVMQTGQQMGMQTFTQSYQQRV
AAGLL

Nucleotide


Download         Length: 978 bp        

>NTDB_id=1093431 ACMGGS_RS01960 WP_414164828.1 411691..412668(-) (pilT) [Superficieibacter sp. BNK-5]
ATGGATATGGAAGAAATCGTGGCCCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGCAACGCCTGGCCGCCACG
CTGGCGACGGTCAGGGAAACTGGAACCTGCACCTTTTGCGTCCATGGACGTTGAAAAAGTGCTTAATGACTGTCTGGATG
AGGCACAGATGGCGCAGTTCACTCGCGGGCAGGTCGATTTCGCCATCACGCTACCGTGCCAGCAGCGGTTGCGTGCCAGC
GCTTTTATTCATCGTCAGGGCGCGTCGCTTGCGCTTCGATTGCTGCCCACTGAAACGCCGCACCTCGCCGACCTGGGTGT
GCCCGCCGCGCTGCCGGAGTTATTAAATGAAGAGAGCGGGCTGATTCTGGTGACCGGGGCAACCGGCAGCGGTAAATCGA
CGACTCTCGCGGCGATGGTCGATCATCTGAATCATCATCTGGACGGGCATATTTTGACGCTGGAAGATCCGATTGAGTTT
GTCCATCGCAGTCAGCGCTGTCTGATCCAGCAGCGGGAAGTCGGTCGCCATACCGACTCATTTGCTGCGGCGCTACGCGC
GGCATTACGTGAAGATCCTGACGTCATTCTGCTCGGTGAGCTACGCGACAGCGAAACCATCCGCCTGGCATTAACCGCCG
CAGAAACCGGACATCTGGTGCTGGCGACGCTGCATACGCGCGGGGCAGCTCAGGCGGTAGAAAGGCTGGTCGATGTCTTT
CCCGCTCAGGAGAAAGAGCAGGTGCGCAGCCAGCTCGCCGGAAGCCTGTGTGCGGTGGTGGCGCAAAAGCTTCAATGTAG
CCCGCAAAATACGCGGGTAGCGCTGTTTGAGATGTTAATTAATACGCCCGCCGTCGCTAATCTGATCCGCGAGGGCAAAA
CGCACCAGCTACCCGGTGTGATGCAAACCGGGCAGCAGATGGGGATGCAGACCTTTACGCAAAGCTACCAGCAGCGGGTA
GCGGCCGGGCTGCTTTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(76-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

51.672

100

0.523
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

51.672

100

0.523
  pilT Neisseria meningitidis 8013

49.697

100

0.505
  pilT Neisseria gonorrhoeae MS11

49.394

100

0.502
  pilT Legionella pneumophila strain ERS1305867

48.632

100

0.492
  pilT Legionella pneumophila strain Lp02

48.632

100

0.492
  pilT Pseudomonas stutzeri DSM 10701

48.632

100

0.492
  pilT Pseudomonas aeruginosa PAK

48.024

100

0.486
  pilT Acinetobacter baylyi ADP1

47.72

100

0.483
  pilT Acinetobacter baumannii strain A118

47.416

100

0.48
  pilT Acinetobacter baumannii D1279779

47.416

100

0.48
  pilT Acinetobacter nosocomialis M2

47.112

100

0.477
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

46.372

97.538

0.452
  pilU Pseudomonas stutzeri DSM 10701

42.988

100

0.434
  pilU Vibrio cholerae strain A1552

41.358

99.692

0.412
  pilU Acinetobacter baylyi ADP1

39.564

98.769

0.391

Multiple sequence alignment