Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   ACL1XL_RS12625 Genome accession   NZ_CP178592
Coordinates   2541979..2543028 (-) Length   349 a.a.
NCBI ID   WP_064219958.1    Uniprot ID   A0A179B867
Organism   Acidithiobacillus ferriphilus strain QBS1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2536979..2548028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL1XL_RS12605 (ACL1XL_12605) - 2537724..2539007 (+) 1284 WP_409409715.1 hypothetical protein -
  ACL1XL_RS12610 (ACL1XL_12610) - 2539151..2539481 (+) 331 Protein_2471 type II toxin-antitoxin system YhaV family toxin -
  ACL1XL_RS12615 (ACL1XL_12615) - 2539670..2540857 (-) 1188 WP_409409714.1 glycosyltransferase -
  ACL1XL_RS12620 (ACL1XL_12620) pilU 2540839..2541969 (-) 1131 WP_215848935.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  ACL1XL_RS12625 (ACL1XL_12625) pilT 2541979..2543028 (-) 1050 WP_064219958.1 type IV pilus twitching motility protein PilT Machinery gene
  ACL1XL_RS12630 (ACL1XL_12630) - 2543129..2543800 (+) 672 WP_215880126.1 YggS family pyridoxal phosphate-dependent enzyme -
  ACL1XL_RS12635 (ACL1XL_12635) proC 2543797..2544624 (+) 828 WP_409409713.1 pyrroline-5-carboxylate reductase -
  ACL1XL_RS12640 (ACL1XL_12640) - 2544621..2544899 (+) 279 WP_215859736.1 YggT family protein -
  ACL1XL_RS12645 (ACL1XL_12645) - 2544924..2545274 (+) 351 WP_064219962.1 DUF167 domain-containing protein -
  ACL1XL_RS12650 (ACL1XL_12650) bioB 2545271..2546221 (+) 951 WP_215861233.1 biotin synthase BioB -
  ACL1XL_RS12655 (ACL1XL_12655) - 2546263..2546832 (-) 570 WP_064219964.1 acyloxyacyl hydrolase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 38466.03 Da        Isoelectric Point: 6.7267

>NTDB_id=1090262 ACL1XL_RS12625 WP_064219958.1 2541979..2543028(-) (pilT) [Acidithiobacillus ferriphilus strain QBS1]
MDISELLAFAVKNNASDTHISAGLSPMLRINGDIRPLNVEAQDRKAVHGMIYDIMNDSQRKGYEENLEIDFAYELPGVAR
FRVNAFNQDRGPAAAFRTIPAKVLSLEDLNAPKSFMEIINVPRGLVLVTGPTGSGKSTTLAAMVDHINANRADHIITIED
PIEFLHTPKKCLVNQREVGANTHSFEHALRSALREDPDIILVGELRDLETMRLALTAAETGHIVFATLHTSSAPKTIDRI
VDSFPGGEKDMVRAMLSESLRAVISQTLLKTADGKGRVAAHEIMIATPAIRNLIRENKVAQMYSVIQTGQNQGMQTLDQC
LADLVRAHKVTREDALRRVQNKDSFMNVA

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=1090262 ACL1XL_RS12625 WP_064219958.1 2541979..2543028(-) (pilT) [Acidithiobacillus ferriphilus strain QBS1]
ATGGACATTTCAGAACTGCTTGCTTTCGCGGTGAAAAACAATGCTTCGGACACGCATATCTCGGCGGGTTTGTCGCCCAT
GCTGCGGATCAACGGCGATATCCGCCCTCTCAATGTCGAGGCGCAGGACAGAAAGGCCGTACATGGCATGATTTACGACA
TCATGAATGATTCCCAGCGGAAGGGGTATGAGGAAAATCTGGAAATCGATTTTGCCTATGAACTGCCCGGCGTGGCGCGT
TTTCGGGTTAACGCCTTCAACCAGGACCGTGGGCCTGCGGCGGCGTTCCGGACGATCCCCGCCAAGGTGCTGAGTCTGGA
AGATCTCAATGCACCCAAGTCTTTTATGGAGATCATCAACGTACCGCGCGGACTGGTGCTGGTCACCGGGCCGACGGGGT
CGGGTAAATCAACGACGCTGGCAGCGATGGTGGATCATATCAATGCGAACCGCGCCGACCATATTATCACCATTGAAGAT
CCCATCGAATTTTTGCACACTCCCAAGAAGTGTCTCGTCAACCAGCGCGAGGTAGGCGCCAACACCCATTCCTTTGAACA
TGCCCTGCGCTCAGCCTTACGTGAAGATCCGGATATTATTCTGGTGGGCGAATTGCGTGACTTGGAGACCATGCGCCTGG
CTCTGACTGCGGCGGAAACGGGCCATATCGTGTTTGCGACGCTGCATACCAGTTCGGCGCCGAAAACCATCGACCGTATT
GTCGACTCCTTTCCTGGGGGGGAAAAGGATATGGTTCGCGCGATGCTGTCAGAATCCCTGCGCGCGGTTATTTCTCAGAC
CCTGCTCAAAACGGCCGATGGTAAAGGCCGGGTCGCCGCGCATGAAATTATGATTGCCACACCGGCCATCCGAAACCTCA
TTCGCGAAAATAAGGTGGCGCAGATGTACTCGGTGATCCAGACCGGACAAAATCAGGGTATGCAAACTCTCGACCAGTGC
CTTGCCGACCTGGTGCGTGCCCACAAGGTAACCCGCGAAGATGCCTTGCGTAGGGTTCAGAACAAAGACAGCTTTATGAA
TGTGGCCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A179B867

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

68.497

99.14

0.679
  pilT Acinetobacter baumannii D1279779

68.497

99.14

0.679
  pilT Acinetobacter baumannii strain A118

68.497

99.14

0.679
  pilT Pseudomonas stutzeri DSM 10701

68.406

98.854

0.676
  pilT Pseudomonas aeruginosa PAK

67.536

98.854

0.668
  pilT Acinetobacter baylyi ADP1

70.462

93.123

0.656
  pilT Legionella pneumophila strain Lp02

65.797

98.854

0.65
  pilT Legionella pneumophila strain ERS1305867

65.797

98.854

0.65
  pilT Neisseria meningitidis 8013

65.217

98.854

0.645
  pilT Neisseria gonorrhoeae MS11

64.928

98.854

0.642
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

68.308

93.123

0.636
  pilT Vibrio cholerae strain A1552

68.308

93.123

0.636
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.57

100

0.496
  pilU Pseudomonas stutzeri DSM 10701

42.56

96.275

0.41
  pilU Acinetobacter baylyi ADP1

42.308

96.848

0.41
  pilU Vibrio cholerae strain A1552

39.881

96.275

0.384

Multiple sequence alignment