Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | ACJ7VY_RS02365 | Genome accession | NZ_CP176501 |
| Coordinates | 550227..551357 (-) | Length | 376 a.a. |
| NCBI ID | WP_054662659.1 | Uniprot ID | A0A0S1AW47 |
| Organism | Stenotrophomonas sp. Y-13 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 545227..556357
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACJ7VY_RS02350 (ACJ7VY_02350) | - | 546482..547876 (-) | 1395 | WP_161615289.1 | DEAD/DEAH box helicase | - |
| ACJ7VY_RS02355 (ACJ7VY_02355) | - | 548356..549345 (+) | 990 | WP_161615290.1 | fumarylacetoacetate hydrolase family protein | - |
| ACJ7VY_RS02360 (ACJ7VY_02360) | maiA | 549489..550145 (+) | 657 | WP_161615291.1 | maleylacetoacetate isomerase | - |
| ACJ7VY_RS02365 (ACJ7VY_02365) | pilU | 550227..551357 (-) | 1131 | WP_054662659.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| ACJ7VY_RS02370 (ACJ7VY_02370) | - | 551451..551837 (+) | 387 | WP_054662662.1 | DUF4398 domain-containing protein | - |
| ACJ7VY_RS02375 (ACJ7VY_02375) | - | 551837..552718 (+) | 882 | WP_161615292.1 | OmpA family protein | - |
| ACJ7VY_RS02380 (ACJ7VY_02380) | - | 553112..553330 (+) | 219 | WP_054662668.1 | YdcH family protein | - |
| ACJ7VY_RS02385 (ACJ7VY_02385) | - | 553517..554887 (+) | 1371 | WP_104937972.1 | pyridoxal-phosphate dependent enzyme | - |
Sequence
Protein
Download Length: 376 a.a. Molecular weight: 41589.84 Da Isoelectric Point: 6.5062
>NTDB_id=1080467 ACJ7VY_RS02365 WP_054662659.1 550227..551357(-) (pilU) [Stenotrophomonas sp. Y-13]
MDIGYFLKLMTEKNASDMFLTTGAPVHIKIEGKLYPLGNTGLPPGMVKKIAYSLMDEGQVPQFERDLELNMAIALADVGR
FRVNVFKQRGEVGMVIRAIKNRIPSIEELKLPDVLKDVIMTPRGLVLVVGSTGSGKSTSLASMIDHRNATTTGHILTIED
PIEFLHRHKQSIVNQREVGLDTHAFHNALKNAMREAPDVILIGEILDAETMEAAIAFAETGHLCLATLHSNNADQTIERI
LNFFPESAHRNVLMNLSLNLRAVISQRLVKGTDGRRRPATEVLINTPMIRDLLRRGQVHEIKQAMEQSLEEGMHSFDQCL
FRLAKEGVIEQEEALRAADSRDGLALKFRLSEGASGEHDPYADFSAAAPASITHGF
MDIGYFLKLMTEKNASDMFLTTGAPVHIKIEGKLYPLGNTGLPPGMVKKIAYSLMDEGQVPQFERDLELNMAIALADVGR
FRVNVFKQRGEVGMVIRAIKNRIPSIEELKLPDVLKDVIMTPRGLVLVVGSTGSGKSTSLASMIDHRNATTTGHILTIED
PIEFLHRHKQSIVNQREVGLDTHAFHNALKNAMREAPDVILIGEILDAETMEAAIAFAETGHLCLATLHSNNADQTIERI
LNFFPESAHRNVLMNLSLNLRAVISQRLVKGTDGRRRPATEVLINTPMIRDLLRRGQVHEIKQAMEQSLEEGMHSFDQCL
FRLAKEGVIEQEEALRAADSRDGLALKFRLSEGASGEHDPYADFSAAAPASITHGF
Nucleotide
Download Length: 1131 bp
>NTDB_id=1080467 ACJ7VY_RS02365 WP_054662659.1 550227..551357(-) (pilU) [Stenotrophomonas sp. Y-13]
ATGGATATCGGCTATTTCCTGAAGCTGATGACCGAAAAGAACGCATCGGACATGTTCCTGACCACGGGGGCGCCGGTGCA
CATCAAGATCGAGGGCAAGTTGTACCCCCTGGGCAATACCGGCCTGCCGCCGGGCATGGTCAAGAAGATCGCCTACTCGC
TGATGGACGAGGGCCAGGTGCCGCAGTTCGAGCGCGACCTGGAGCTGAACATGGCCATCGCACTGGCCGATGTGGGGCGG
TTCCGGGTGAACGTGTTCAAGCAGCGCGGCGAAGTGGGCATGGTCATCCGCGCGATCAAGAACCGGATCCCCTCGATCGA
GGAGCTGAAGCTGCCGGACGTGCTCAAGGACGTGATCATGACCCCGCGCGGGCTGGTGCTGGTGGTCGGCTCCACCGGTT
CGGGCAAGTCCACCTCGCTGGCGTCGATGATCGACCACCGCAACGCCACCACCACCGGGCACATCCTCACCATCGAGGAT
CCGATCGAATTCCTGCACCGGCACAAGCAGTCCATCGTCAACCAGCGCGAGGTCGGGCTGGACACCCACGCCTTCCACAA
CGCGCTGAAGAACGCGATGCGCGAGGCGCCGGACGTGATCCTGATCGGCGAGATCCTCGACGCCGAGACCATGGAGGCGG
CCATCGCCTTCGCCGAGACCGGCCACCTGTGCCTGGCCACGCTGCACTCCAACAACGCCGACCAGACCATCGAGCGCATC
CTCAACTTCTTCCCCGAGAGCGCGCACCGCAACGTGCTGATGAACCTGTCGCTGAACCTGCGCGCGGTGATCAGCCAGCG
CCTGGTCAAGGGCACCGACGGCCGCCGCCGGCCCGCGACCGAGGTGCTGATCAACACGCCGATGATCCGCGACCTGCTGC
GCCGCGGTCAGGTGCACGAGATCAAGCAGGCCATGGAGCAGTCGCTCGAAGAGGGCATGCACAGTTTCGACCAGTGCCTG
TTCCGGCTGGCCAAGGAGGGCGTGATCGAGCAGGAGGAGGCGCTGCGCGCGGCCGATTCGCGCGATGGTCTGGCGCTCAA
GTTCCGGCTGTCCGAGGGCGCCAGCGGCGAGCACGACCCCTATGCGGATTTCTCGGCGGCGGCACCGGCGTCGATCACCC
ACGGGTTCTGA
ATGGATATCGGCTATTTCCTGAAGCTGATGACCGAAAAGAACGCATCGGACATGTTCCTGACCACGGGGGCGCCGGTGCA
CATCAAGATCGAGGGCAAGTTGTACCCCCTGGGCAATACCGGCCTGCCGCCGGGCATGGTCAAGAAGATCGCCTACTCGC
TGATGGACGAGGGCCAGGTGCCGCAGTTCGAGCGCGACCTGGAGCTGAACATGGCCATCGCACTGGCCGATGTGGGGCGG
TTCCGGGTGAACGTGTTCAAGCAGCGCGGCGAAGTGGGCATGGTCATCCGCGCGATCAAGAACCGGATCCCCTCGATCGA
GGAGCTGAAGCTGCCGGACGTGCTCAAGGACGTGATCATGACCCCGCGCGGGCTGGTGCTGGTGGTCGGCTCCACCGGTT
CGGGCAAGTCCACCTCGCTGGCGTCGATGATCGACCACCGCAACGCCACCACCACCGGGCACATCCTCACCATCGAGGAT
CCGATCGAATTCCTGCACCGGCACAAGCAGTCCATCGTCAACCAGCGCGAGGTCGGGCTGGACACCCACGCCTTCCACAA
CGCGCTGAAGAACGCGATGCGCGAGGCGCCGGACGTGATCCTGATCGGCGAGATCCTCGACGCCGAGACCATGGAGGCGG
CCATCGCCTTCGCCGAGACCGGCCACCTGTGCCTGGCCACGCTGCACTCCAACAACGCCGACCAGACCATCGAGCGCATC
CTCAACTTCTTCCCCGAGAGCGCGCACCGCAACGTGCTGATGAACCTGTCGCTGAACCTGCGCGCGGTGATCAGCCAGCG
CCTGGTCAAGGGCACCGACGGCCGCCGCCGGCCCGCGACCGAGGTGCTGATCAACACGCCGATGATCCGCGACCTGCTGC
GCCGCGGTCAGGTGCACGAGATCAAGCAGGCCATGGAGCAGTCGCTCGAAGAGGGCATGCACAGTTTCGACCAGTGCCTG
TTCCGGCTGGCCAAGGAGGGCGTGATCGAGCAGGAGGAGGCGCTGCGCGCGGCCGATTCGCGCGATGGTCTGGCGCTCAA
GTTCCGGCTGTCCGAGGGCGCCAGCGGCGAGCACGACCCCTATGCGGATTTCTCGGCGGCGGCACCGGCGTCGATCACCC
ACGGGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
52.925 |
95.479 |
0.505 |
| pilU | Acinetobacter baylyi ADP1 |
50.42 |
94.947 |
0.479 |
| pilU | Vibrio cholerae strain A1552 |
49.435 |
94.149 |
0.465 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
45.283 |
98.67 |
0.447 |
| pilT | Pseudomonas aeruginosa PAK |
43.195 |
89.894 |
0.388 |
| pilT | Acinetobacter baumannii strain A118 |
42.012 |
89.894 |
0.378 |
| pilT | Acinetobacter nosocomialis M2 |
42.012 |
89.894 |
0.378 |
| pilT | Acinetobacter baumannii D1279779 |
42.012 |
89.894 |
0.378 |
| pilT | Acinetobacter baylyi ADP1 |
41.471 |
90.426 |
0.375 |
| pilT | Pseudomonas stutzeri DSM 10701 |
41.716 |
89.894 |
0.375 |
| pilT | Neisseria meningitidis 8013 |
40.346 |
92.287 |
0.372 |
| pilT | Neisseria gonorrhoeae MS11 |
40.346 |
92.287 |
0.372 |
| pilT | Vibrio cholerae strain A1552 |
42.042 |
88.564 |
0.372 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
42.042 |
88.564 |
0.372 |
| pilT | Legionella pneumophila strain ERS1305867 |
40.828 |
89.894 |
0.367 |
| pilT | Legionella pneumophila strain Lp02 |
40.828 |
89.894 |
0.367 |