Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   ACJ2U2_RS03610 Genome accession   NZ_CP175543
Coordinates   748314..749366 (+) Length   350 a.a.
NCBI ID   WP_314137194.1    Uniprot ID   -
Organism   Clostridium perfringens strain GZ-3     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 743314..754366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJ2U2_RS03590 (ACJ2U2_03590) - 743735..744964 (+) 1230 WP_003459619.1 U32 family peptidase -
  ACJ2U2_RS03595 (ACJ2U2_03595) udk 744964..745590 (+) 627 WP_003459577.1 uridine kinase -
  ACJ2U2_RS03600 (ACJ2U2_03600) - 745703..747370 (+) 1668 WP_004458153.1 penicillin-binding transpeptidase domain-containing protein -
  ACJ2U2_RS03605 (ACJ2U2_03605) sigK 747433..748134 (+) 702 WP_003451260.1 RNA polymerase sporulation sigma factor SigK -
  ACJ2U2_RS03610 (ACJ2U2_03610) pilT 748314..749366 (+) 1053 WP_314137194.1 type IV pilus twitching motility protein PilT Machinery gene
  ACJ2U2_RS03615 (ACJ2U2_03615) - 749444..750682 (+) 1239 WP_003478307.1 cell division FtsA domain-containing protein -
  ACJ2U2_RS03620 (ACJ2U2_03620) ftsZ 750696..751841 (+) 1146 WP_003449411.1 cell division protein FtsZ -
  ACJ2U2_RS03625 (ACJ2U2_03625) spoIIGA 752246..753052 (+) 807 WP_003458523.1 sigma-E processing peptidase SpoIIGA -
  ACJ2U2_RS03630 (ACJ2U2_03630) sigE 753066..753773 (+) 708 WP_110083303.1 RNA polymerase sporulation sigma factor SigE -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 39073.74 Da        Isoelectric Point: 5.2949

>NTDB_id=1078080 ACJ2U2_RS03610 WP_314137194.1 748314..749366(+) (pilT) [Clostridium perfringens strain GZ-3]
MQSLAELLELTVKEGASDLHLTVGISPIIKVNGKLVRLEHEILRPEDTEAYAREILQDAYEKYDDIGEYDTSYSIHGKGR
FRVNIYKQRNSTALAIRVISLDMPTLDSLGYPETLKDICNLKRGLVLVTGPTGSGKSTTLAALINEINSNRESHIITIED
PIEFLHKHNKSIVNQREIGKDTLSYERALKAALREDPDVILIGEMRDLETISTAITAAETGHLVFSTLHTIGAAKTIDRI
VDVFPPHQQEQIKIQLASVLQIIISQQLVETVDGDRNAALEIMVATPAIKNLIREGKTHQIESSIQTGSKYGMRTMDMEL
ANLYREGIITQETAMNSAIDREILSRLLMY

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=1078080 ACJ2U2_RS03610 WP_314137194.1 748314..749366(+) (pilT) [Clostridium perfringens strain GZ-3]
ATGCAAAGTTTAGCAGAACTTTTAGAGTTAACAGTTAAAGAAGGAGCATCTGATTTGCATTTAACAGTAGGTATTTCTCC
TATAATAAAAGTTAATGGAAAATTAGTAAGGTTAGAACATGAAATATTACGCCCTGAAGATACTGAAGCGTATGCTAGAG
AGATATTACAGGATGCATATGAAAAGTATGATGATATTGGAGAATACGATACATCATATTCAATACATGGTAAAGGTAGA
TTTAGAGTTAATATATATAAACAAAGAAATAGTACAGCTTTAGCTATAAGAGTTATATCTTTAGATATGCCAACTTTAGA
TAGTTTAGGATATCCTGAGACTTTAAAGGATATATGTAATCTTAAAAGAGGACTTGTATTAGTTACAGGACCTACTGGAA
GTGGTAAAAGTACAACTTTAGCAGCTTTAATCAATGAAATAAATAGTAATAGAGAATCTCATATAATAACAATAGAAGAT
CCTATAGAGTTTCTTCATAAACATAATAAATCTATTGTAAACCAAAGAGAGATAGGCAAGGACACTCTAAGTTATGAAAG
AGCCTTAAAAGCAGCTCTTAGAGAGGATCCTGATGTTATTTTAATTGGAGAAATGAGAGATTTAGAGACTATTTCAACAG
CTATAACAGCGGCAGAGACTGGACACTTAGTATTTTCAACTCTTCATACTATAGGAGCTGCTAAGACTATAGATAGAATA
GTAGATGTTTTTCCACCACATCAGCAGGAACAAATAAAAATACAGTTAGCTTCTGTTTTACAAATAATTATATCACAACA
ATTAGTGGAAACCGTTGATGGAGATAGAAATGCTGCATTAGAAATAATGGTTGCTACACCAGCTATAAAAAATTTAATAA
GAGAAGGAAAAACTCATCAAATAGAATCTTCTATCCAAACTGGAAGTAAATATGGAATGAGAACGATGGACATGGAACTT
GCTAATCTGTATAGAGAAGGTATAATAACACAAGAAACGGCAATGAATTCTGCTATAGATAGGGAGATTTTAAGTCGATT
ATTGATGTATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(13-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.711

98.857

0.491
  pilT Neisseria meningitidis 8013

49.709

98.286

0.489
  pilT Neisseria gonorrhoeae MS11

49.709

98.286

0.489
  pilT Pseudomonas aeruginosa PAK

50.298

96

0.483
  pilT Legionella pneumophila strain Lp02

49.415

97.714

0.483
  pilT Legionella pneumophila strain ERS1305867

49.415

97.714

0.483
  pilT Pseudomonas stutzeri DSM 10701

50

96

0.48
  pilT Acinetobacter baylyi ADP1

50.602

94.857

0.48
  pilT Acinetobacter baumannii strain A118

49.702

96

0.477
  pilT Acinetobacter baumannii D1279779

49.702

96

0.477
  pilT Acinetobacter nosocomialis M2

49.702

96

0.477
  pilT Vibrio cholerae strain A1552

50.765

93.429

0.474
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

50.765

93.429

0.474
  pilU Pseudomonas stutzeri DSM 10701

43.976

94.857

0.417
  pilU Vibrio cholerae strain A1552

40.653

96.286

0.391
  pilU Acinetobacter baylyi ADP1

39.823

96.857

0.386

Multiple sequence alignment