Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   ACI51X_RS03850 Genome accession   NZ_CP173623
Coordinates   877018..878034 (+) Length   338 a.a.
NCBI ID   WP_103942389.1    Uniprot ID   -
Organism   Pectobacterium versatile strain M10     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 872018..883034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI51X_RS03820 (ACI51X_03820) hemW 872723..873865 (-) 1143 WP_226310131.1 radical SAM family heme chaperone HemW -
  ACI51X_RS03825 (ACI51X_03825) - 873858..874451 (-) 594 WP_039470191.1 XTP/dITP diphosphatase -
  ACI51X_RS03830 (ACI51X_03830) yggU 874483..874773 (-) 291 WP_010295005.1 DUF167 family protein YggU -
  ACI51X_RS03835 (ACI51X_03835) - 874770..875324 (-) 555 WP_010295003.1 YggT family protein -
  ACI51X_RS03840 (ACI51X_03840) proC 875374..876195 (-) 822 WP_107333738.1 pyrroline-5-carboxylate reductase -
  ACI51X_RS03845 (ACI51X_03845) - 876283..876996 (-) 714 WP_103942386.1 YggS family pyridoxal phosphate-dependent enzyme -
  ACI51X_RS03850 (ACI51X_03850) pilT 877018..878034 (+) 1017 WP_103942389.1 type IV pilus twitching motility protein PilT Machinery gene
  ACI51X_RS03855 (ACI51X_03855) - 878003..879835 (-) 1833 WP_405081520.1 diguanylate cyclase -
  ACI51X_RS03860 (ACI51X_03860) - 880368..881939 (-) 1572 WP_109225257.1 methyl-accepting chemotaxis protein -
  ACI51X_RS03865 (ACI51X_03865) nsrR 882283..882708 (+) 426 WP_010279087.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 36771.99 Da        Isoelectric Point: 6.6280

>NTDB_id=1073256 ACI51X_RS03850 WP_103942389.1 877018..878034(+) (pilT) [Pectobacterium versatile strain M10]
MELDEWMARSVKHNASDLHLCSGHPPVLRVDGRLQPENTLPRLTPDQVAQWCDAWLEPAQREQLRQAGQVDGALMLPDGQ
RLRVNVFRQREGLSAALRVIPSAQPSLDALHAPPVFSTLLEKPNGLLLITGATGSGKSTTLAAMLGALNDRCDRHVITLE
DPIEFIHASRRCLIQQREIGAHSASFAQALRAALREDPDVILLGELRDTETIRLALTAAETGHLVLSTLHTRSASQAVDR
LIDVFPGEEKAYVRSQLATCLQAVVTQTLLPAAHGGRIALYEVLTATAAVSNLIREGKTHQLPGLIQTGAAAGMQTFEQS
YQQRCRDGLISHSCDLAV

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=1073256 ACI51X_RS03850 WP_103942389.1 877018..878034(+) (pilT) [Pectobacterium versatile strain M10]
ATGGAGTTGGATGAGTGGATGGCGCGTAGTGTAAAACATAATGCCTCGGATCTGCACCTTTGTAGCGGTCACCCGCCGGT
GTTGCGTGTGGACGGGCGGCTACAGCCTGAAAATACCTTACCACGTTTAACGCCAGATCAGGTGGCACAATGGTGCGATG
CCTGGCTCGAACCGGCTCAGCGCGAGCAACTGCGGCAGGCTGGTCAGGTGGATGGGGCATTAATGCTGCCTGATGGGCAA
CGCCTGCGGGTTAACGTGTTTCGCCAGCGGGAAGGGCTGTCTGCGGCGCTGCGCGTTATTCCATCCGCTCAGCCTTCATT
GGACGCGCTACACGCGCCACCCGTTTTCTCGACGCTGCTGGAGAAACCGAACGGACTGCTCCTGATTACCGGTGCGACGG
GGAGCGGCAAATCCACGACGCTGGCGGCCATGCTTGGGGCGTTAAACGACCGCTGCGATCGCCATGTGATTACGCTGGAG
GACCCGATCGAGTTTATCCATGCTAGCCGACGCTGCCTGATTCAACAGCGGGAGATCGGTGCGCACAGCGCGTCGTTTGC
GCAGGCATTACGGGCCGCATTGCGGGAGGATCCCGATGTCATTCTGCTGGGAGAACTACGCGATACGGAGACGATTCGGC
TGGCTCTGACGGCGGCGGAGACCGGCCATCTGGTGTTGTCGACGCTGCATACCCGTAGCGCATCGCAGGCGGTCGATCGT
CTGATTGACGTCTTTCCAGGTGAAGAAAAAGCCTATGTTCGCAGCCAGTTAGCCACCTGTTTGCAGGCGGTGGTGACGCA
AACACTTTTGCCTGCGGCACACGGTGGTCGCATTGCGCTTTATGAAGTACTGACCGCCACCGCGGCAGTCAGTAACCTGA
TTCGGGAAGGGAAAACGCACCAGCTCCCCGGCCTGATTCAGACGGGAGCCGCTGCGGGAATGCAAACGTTCGAGCAAAGC
TACCAGCAGCGCTGTCGGGATGGGCTTATTTCACACAGTTGCGACCTTGCCGTTTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

51.515

97.633

0.503
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

51.515

97.633

0.503
  pilT Neisseria meningitidis 8013

50.602

98.225

0.497
  pilT Neisseria gonorrhoeae MS11

50.301

98.225

0.494
  pilT Pseudomonas stutzeri DSM 10701

49.849

97.929

0.488
  pilT Pseudomonas aeruginosa PAK

49.547

97.929

0.485
  pilT Acinetobacter baylyi ADP1

49.547

97.929

0.485
  pilT Acinetobacter baumannii D1279779

49.245

97.929

0.482
  pilT Acinetobacter baumannii strain A118

49.245

97.929

0.482
  pilT Acinetobacter nosocomialis M2

49.245

97.929

0.482
  pilT Legionella pneumophila strain ERS1305867

48.943

97.929

0.479
  pilT Legionella pneumophila strain Lp02

48.943

97.929

0.479
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.136

99.704

0.42
  pilU Vibrio cholerae strain A1552

38.776

100

0.393
  pilU Pseudomonas stutzeri DSM 10701

39.339

98.521

0.388
  pilU Acinetobacter baylyi ADP1

38.199

95.266

0.364

Multiple sequence alignment