Detailed information
Bioinformatically predicted
Overview
| Name | comGC/cglC | Type | Machinery gene |
| Locus tag | AABA19_RS09840 | Genome accession | NZ_AP028609 |
| Coordinates | 1909928..1910254 (-) | Length | 108 a.a. |
| NCBI ID | WP_061630249.1 | Uniprot ID | - |
| Organism | Streptococcus pneumoniae strain Sep4 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1904928..1915254
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AABA19_RS09795 (TKY121806_19100) | rnpA | 1904945..1905316 (-) | 372 | WP_000739246.1 | ribonuclease P protein component | - |
| AABA19_RS09800 | - | 1905333..1905464 (-) | 132 | WP_000768904.1 | hypothetical protein | - |
| AABA19_RS09805 (TKY121806_19110) | - | 1905465..1906655 (-) | 1191 | WP_000167766.1 | acetate kinase | - |
| AABA19_RS09810 (TKY121806_19120) | comYH | 1906706..1907659 (-) | 954 | WP_338170756.1 | class I SAM-dependent methyltransferase | Machinery gene |
| AABA19_RS09815 | - | 1907720..1908314 (-) | 595 | Protein_1910 | class I SAM-dependent methyltransferase | - |
| AABA19_RS09820 (TKY121806_19150) | comGG/cglG | 1908451..1908864 (-) | 414 | WP_050114148.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| AABA19_RS09825 (TKY121806_19160) | comGF/cglF | 1908842..1909303 (-) | 462 | WP_063643062.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| AABA19_RS09830 (TKY121806_19170) | comGE/cglE | 1909266..1909568 (-) | 303 | WP_000413382.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| AABA19_RS09835 (TKY121806_19180) | comGD/cglD | 1909531..1909935 (-) | 405 | WP_000588023.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| AABA19_RS09840 (TKY121806_19190) | comGC/cglC | 1909928..1910254 (-) | 327 | WP_061630249.1 | comG operon protein ComGC | Machinery gene |
| AABA19_RS09845 (TKY121806_19200) | comGB/cglB | 1910256..1911272 (-) | 1017 | WP_075270915.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| AABA19_RS09850 (TKY121806_19210) | comGA/cglA/cilD | 1911220..1912161 (-) | 942 | WP_016398028.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| AABA19_RS09855 (TKY121806_19220) | - | 1912237..1912602 (-) | 366 | WP_000286415.1 | DUF1033 family protein | - |
| AABA19_RS09860 (TKY121806_19230) | - | 1912753..1913811 (-) | 1059 | WP_000649468.1 | zinc-dependent alcohol dehydrogenase family protein | - |
| AABA19_RS09865 (TKY121806_19240) | nagA | 1913974..1915125 (-) | 1152 | WP_001134457.1 | N-acetylglucosamine-6-phosphate deacetylase | - |
Sequence
Protein
Download Length: 108 a.a. Molecular weight: 12226.41 Da Isoelectric Point: 10.1432
>NTDB_id=106468 AABA19_RS09840 WP_061630249.1 1909928..1910254(-) (comGC/cglC) [Streptococcus pneumoniae strain Sep4]
MKKMMTFLKKAKVKAFTLVEMLVVLLIISVLFLLFVPNLTKQKEAVNDKGKAAVVKVVESQAELYSLEKNEDASLRKLQA
DGRITEEQVKAYNEYYTKNGGANRKVND
MKKMMTFLKKAKVKAFTLVEMLVVLLIISVLFLLFVPNLTKQKEAVNDKGKAAVVKVVESQAELYSLEKNEDASLRKLQA
DGRITEEQVKAYNEYYTKNGGANRKVND
Nucleotide
Download Length: 327 bp
>NTDB_id=106468 AABA19_RS09840 WP_061630249.1 1909928..1910254(-) (comGC/cglC) [Streptococcus pneumoniae strain Sep4]
ATGAAAAAAATGATGACATTCTTGAAAAAAGCTAAGGTTAAAGCTTTTACATTGGTGGAAATGTTGGTGGTCTTGCTGAT
TATCAGCGTGCTTTTCTTGCTCTTTGTACCTAATCTGACCAAGCAAAAAGAAGCAGTCAATGACAAAGGAAAAGCAGCTG
TTGTTAAGGTGGTGGAAAGCCAGGCAGAACTTTATAGCTTAGAAAAGAATGAAGATGCTAGCCTAAGAAAGTTACAAGCA
GATGGGCGCATCACGGAAGAACAGGTTAAAGCTTATAATGAATACTATACTAAAAATGGAGGGGCAAATCGTAAAGTCAA
TGATTAA
ATGAAAAAAATGATGACATTCTTGAAAAAAGCTAAGGTTAAAGCTTTTACATTGGTGGAAATGTTGGTGGTCTTGCTGAT
TATCAGCGTGCTTTTCTTGCTCTTTGTACCTAATCTGACCAAGCAAAAAGAAGCAGTCAATGACAAAGGAAAAGCAGCTG
TTGTTAAGGTGGTGGAAAGCCAGGCAGAACTTTATAGCTTAGAAAAGAATGAAGATGCTAGCCTAAGAAAGTTACAAGCA
GATGGGCGCATCACGGAAGAACAGGTTAAAGCTTATAATGAATACTATACTAAAAATGGAGGGGCAAATCGTAAAGTCAA
TGATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC/cglC | Streptococcus pneumoniae Rx1 |
96.296 |
100 |
0.963 |
| comGC/cglC | Streptococcus pneumoniae D39 |
96.296 |
100 |
0.963 |
| comGC/cglC | Streptococcus pneumoniae R6 |
96.296 |
100 |
0.963 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
96.296 |
100 |
0.963 |
| comGC/cglC | Streptococcus mitis SK321 |
95.37 |
100 |
0.954 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
92.857 |
90.741 |
0.843 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
66.99 |
95.37 |
0.639 |
| comYC | Streptococcus mutans UA140 |
61.765 |
94.444 |
0.583 |
| comYC | Streptococcus mutans UA159 |
61.765 |
94.444 |
0.583 |
| comYC | Streptococcus suis isolate S10 |
69.136 |
75 |
0.519 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
54.902 |
94.444 |
0.519 |
| comGC | Staphylococcus aureus MW2 |
50 |
79.63 |
0.398 |
| comGC | Staphylococcus aureus N315 |
50 |
79.63 |
0.398 |