Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG/cglG   Type   Machinery gene
Locus tag   AABA19_RS09820 Genome accession   NZ_AP028609
Coordinates   1908451..1908864 (-) Length   137 a.a.
NCBI ID   WP_050114148.1    Uniprot ID   A0A4J1TDX6
Organism   Streptococcus pneumoniae strain Sep4     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1903451..1913864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA19_RS09790 (TKY121806_19090) - 1904146..1904970 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  AABA19_RS09795 (TKY121806_19100) rnpA 1904945..1905316 (-) 372 WP_000739246.1 ribonuclease P protein component -
  AABA19_RS09800 - 1905333..1905464 (-) 132 WP_000768904.1 hypothetical protein -
  AABA19_RS09805 (TKY121806_19110) - 1905465..1906655 (-) 1191 WP_000167766.1 acetate kinase -
  AABA19_RS09810 (TKY121806_19120) comYH 1906706..1907659 (-) 954 WP_338170756.1 class I SAM-dependent methyltransferase Machinery gene
  AABA19_RS09815 - 1907720..1908314 (-) 595 Protein_1910 class I SAM-dependent methyltransferase -
  AABA19_RS09820 (TKY121806_19150) comGG/cglG 1908451..1908864 (-) 414 WP_050114148.1 competence type IV pilus minor pilin ComGG Machinery gene
  AABA19_RS09825 (TKY121806_19160) comGF/cglF 1908842..1909303 (-) 462 WP_063643062.1 competence type IV pilus minor pilin ComGF Machinery gene
  AABA19_RS09830 (TKY121806_19170) comGE/cglE 1909266..1909568 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  AABA19_RS09835 (TKY121806_19180) comGD/cglD 1909531..1909935 (-) 405 WP_000588023.1 competence type IV pilus minor pilin ComGD Machinery gene
  AABA19_RS09840 (TKY121806_19190) comGC/cglC 1909928..1910254 (-) 327 WP_061630249.1 comG operon protein ComGC Machinery gene
  AABA19_RS09845 (TKY121806_19200) comGB/cglB 1910256..1911272 (-) 1017 WP_075270915.1 competence type IV pilus assembly protein ComGB Machinery gene
  AABA19_RS09850 (TKY121806_19210) comGA/cglA/cilD 1911220..1912161 (-) 942 WP_016398028.1 competence type IV pilus ATPase ComGA Machinery gene
  AABA19_RS09855 (TKY121806_19220) - 1912237..1912602 (-) 366 WP_000286415.1 DUF1033 family protein -
  AABA19_RS09860 (TKY121806_19230) - 1912753..1913811 (-) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15985.45 Da        Isoelectric Point: 10.2472

>NTDB_id=106464 AABA19_RS09820 WP_050114148.1 1908451..1908864(-) (comGG/cglG) [Streptococcus pneumoniae strain Sep4]
MWKKKKVKAGVLLYAVTIAAIFSLLLQFYLNRQVAHYQDYALNKEKLVAFAMTKRTKDKVEQESGEQVFNLGQVSYQNKK
TGLVTRVRTDKSQYEFLFPSVKIKEEKRDKKEEVATDSSEKVEKKKSEEKPEKKENS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=106464 AABA19_RS09820 WP_050114148.1 1908451..1908864(-) (comGG/cglG) [Streptococcus pneumoniae strain Sep4]
GTGTGGAAAAAGAAAAAAGTTAAGGCAGGTGTTCTCCTCTACGCAGTCACCATAGCAGCCATCTTTAGTCTTTTGTTGCA
ATTTTATTTGAACCGACAAGTCGCCCACTATCAAGACTATGCTTTGAATAAAGAAAAATTGGTTGCTTTTGCTATGACTA
AACGAACCAAAGATAAGGTTGAGCAAGAAAGTGGGGAACAGGTTTTTAATCTAGGTCAGGTAAGCTATCAAAACAAGAAA
ACTGGCTTAGTGACGAGGGTTCGTACGGATAAGAGCCAATATGAGTTTCTGTTTCCTTCAGTCAAAATCAAAGAAGAGAA
AAGAGATAAAAAGGAAGAGGTAGCGACCGATTCAAGCGAAAAAGTGGAGAAGAAAAAATCAGAAGAGAAGCCTGAAAAGA
AAGAGAATTCATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4J1TDX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus pneumoniae Rx1

98.54

100

0.985
  comGG/cglG Streptococcus pneumoniae D39

98.54

100

0.985
  comGG/cglG Streptococcus pneumoniae R6

98.54

100

0.985
  comGG/cglG Streptococcus pneumoniae TIGR4

98.54

100

0.985
  comGG/cglG Streptococcus mitis SK321

86.861

100

0.869
  comGG/cglG Streptococcus mitis NCTC 12261

88.43

88.321

0.781
  comYG Streptococcus mutans UA140

38.06

97.81

0.372
  comYG Streptococcus mutans UA159

38.06

97.81

0.372

Multiple sequence alignment