Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   ACG3JH_RS05520 Genome accession   NZ_CP171731
Coordinates   1097623..1098102 (-) Length   159 a.a.
NCBI ID   WP_003106108.1    Uniprot ID   A0AAE4KZD7
Organism   Streptococcus parauberis strain DB-M1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1092623..1103102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JH_RS05480 (ACG3JH_05480) rsfS 1093399..1093752 (-) 354 WP_003105715.1 ribosome silencing factor -
  ACG3JH_RS05485 (ACG3JH_05485) - 1093770..1094120 (-) 351 WP_259966505.1 isochorismatase family protein -
  ACG3JH_RS05490 (ACG3JH_05490) - 1094012..1094275 (-) 264 WP_259966506.1 isochorismatase family protein -
  ACG3JH_RS05495 (ACG3JH_05495) yqeK 1094278..1094868 (-) 591 WP_004234841.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ACG3JH_RS05500 (ACG3JH_05500) - 1094865..1095497 (-) 633 WP_003104077.1 nicotinate-nucleotide adenylyltransferase -
  ACG3JH_RS05505 (ACG3JH_05505) yhbY 1095524..1095835 (-) 312 WP_003105311.1 ribosome assembly RNA-binding protein YhbY -
  ACG3JH_RS05510 (ACG3JH_05510) yqeH 1095863..1096981 (-) 1119 WP_004234843.1 ribosome biogenesis GTPase YqeH -
  ACG3JH_RS05515 (ACG3JH_05515) - 1096981..1097508 (-) 528 WP_013794302.1 YqeG family HAD IIIA-type phosphatase -
  ACG3JH_RS05520 (ACG3JH_05520) comX/sigX/comX2/sigX2 1097623..1098102 (-) 480 WP_003106108.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 19403.47 Da        Isoelectric Point: 9.1839

>NTDB_id=1063724 ACG3JH_RS05520 WP_003106108.1 1097623..1098102(-) (comX/sigX/comX2/sigX2) [Streptococcus parauberis strain DB-M1]
MDQFDKCFKTVKPTIYKFMRSYYIHLWEKDDWFQEGRLILHDLLHRNPDLYKNEQQLLVYFKTKFSSHLKDVIRFQESQK
RRFNRMPYEEIGEIAHKIPSQGLVLDEFIAYQSIIEQISGILTKEEQSQLYALMRGERFIGRRALLRKIKPFFIDFLDE

Nucleotide


Download         Length: 480 bp        

>NTDB_id=1063724 ACG3JH_RS05520 WP_003106108.1 1097623..1098102(-) (comX/sigX/comX2/sigX2) [Streptococcus parauberis strain DB-M1]
ATGGATCAATTTGATAAATGTTTTAAAACTGTCAAACCAACTATTTATAAATTTATGCGGTCTTATTATATTCACTTATG
GGAAAAGGATGATTGGTTTCAAGAAGGTCGACTCATTTTGCATGATTTACTTCATCGAAATCCAGACTTGTATAAGAATG
AGCAACAACTATTAGTATATTTTAAAACTAAATTTTCTTCACACTTAAAGGATGTTATCCGTTTCCAAGAGAGTCAGAAG
AGACGATTTAATAGAATGCCATATGAAGAAATTGGAGAAATAGCTCATAAAATTCCAAGTCAAGGATTGGTATTGGATGA
GTTTATTGCATACCAATCAATTATTGAACAGATTTCTGGTATCTTAACAAAAGAAGAGCAGTCTCAATTATATGCATTGA
TGAGAGGCGAAAGGTTTATTGGTAGAAGAGCACTATTAAGAAAAATTAAACCATTTTTTATCGATTTCTTGGATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

58

94.34

0.547
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

58

94.34

0.547
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

58

94.34

0.547
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

58

94.34

0.547
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

58

94.34

0.547
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

58

94.34

0.547
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

46.753

96.855

0.453
  comX Streptococcus sobrinus strain NIDR 6715-7

46.104

96.855

0.447
  comX/sigX Streptococcus mutans UA159

45.161

97.484

0.44
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

42.208

96.855

0.409
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

42.208

96.855

0.409
  comX/comX1 Streptococcus pneumoniae Rx1

42.953

93.711

0.403
  comX/comX2 Streptococcus pneumoniae TIGR4

42.953

93.711

0.403
  comX/comX1 Streptococcus pneumoniae TIGR4

42.953

93.711

0.403
  comX/comX2 Streptococcus pneumoniae Rx1

42.953

93.711

0.403
  comX/comX2 Streptococcus pneumoniae D39

42.953

93.711

0.403
  comX/comX1 Streptococcus pneumoniae D39

42.953

93.711

0.403
  comX/comX2 Streptococcus pneumoniae R6

42.953

93.711

0.403
  comX/comX1 Streptococcus pneumoniae R6

42.953

93.711

0.403
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

41.176

96.226

0.396
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

41.176

96.226

0.396
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

41.176

96.226

0.396
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

39.869

96.226

0.384
  comX/sigX Streptococcus suis D9

39.61

96.855

0.384
  comX/sigX Streptococcus suis isolate S10

39.61

96.855

0.384
  comX/sigX Streptococcus suis P1/7

39.61

96.855

0.384
  comX Streptococcus thermophilus LMG 18311

38.562

96.226

0.371
  comX Streptococcus thermophilus LMD-9

38.562

96.226

0.371

Multiple sequence alignment