Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | ACF8MK_RS01690 | Genome accession | NZ_CP171154 |
| Coordinates | 416220..417326 (-) | Length | 368 a.a. |
| NCBI ID | WP_392537916.1 | Uniprot ID | - |
| Organism | Legionella sp. 227 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 411220..422326
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACF8MK_RS01680 (ACF8MK_01680) | - | 413836..414141 (+) | 306 | WP_392537914.1 | hypothetical protein | - |
| ACF8MK_RS01685 (ACF8MK_01685) | ankK | 414207..416147 (-) | 1941 | WP_392537915.1 | Dot/Icm T4SS effector AnkK/LegA5 | - |
| ACF8MK_RS01690 (ACF8MK_01690) | pilU | 416220..417326 (-) | 1107 | WP_392537916.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| ACF8MK_RS01695 (ACF8MK_01695) | - | 417546..419474 (-) | 1929 | WP_392537917.1 | L-gulono-gamma-lactone oxidase | - |
| ACF8MK_RS01700 (ACF8MK_01700) | radA | 419702..421054 (-) | 1353 | WP_392537918.1 | DNA repair protein RadA | - |
| ACF8MK_RS01705 (ACF8MK_01705) | - | 421237..421458 (+) | 222 | WP_265704222.1 | exodeoxyribonuclease VII small subunit | - |
Sequence
Protein
Download Length: 368 a.a. Molecular weight: 41030.15 Da Isoelectric Point: 5.2964
>NTDB_id=1060324 ACF8MK_RS01690 WP_392537916.1 416220..417326(-) (pilU) [Legionella sp. 227]
MDITPFFKLMVDRGASDLFFSVGAPPNIKIEGVISPVGQAPLKSQQMAEIALSLMNDDQRKEFEATMELNMGLSINQVGR
FRINLFRQRGDISMVVRYIKNKIPSIEQLNLPLILKTIVLELRGLVLVVGATGSGKSTTLAAMIDYRNENQSGHILTIED
PIEFIHQHKKSIVDQREVGIDTMSYDNALVNAMREAPDVILIGEIRERNAMKHAIAYAETGHLCISTLHANNANQAMDRI
INFFPEDARKQVLMDLSLNLRAVISMRLVPGVNNQRVAAVELLLNTPYVSDLIEKGKIDDIKEAMERSTEQGMQTFDQAL
LKLYRTGAISKENAIKYADSKNNVGLQIRLNSAGDFDSQDDSLSIEDN
MDITPFFKLMVDRGASDLFFSVGAPPNIKIEGVISPVGQAPLKSQQMAEIALSLMNDDQRKEFEATMELNMGLSINQVGR
FRINLFRQRGDISMVVRYIKNKIPSIEQLNLPLILKTIVLELRGLVLVVGATGSGKSTTLAAMIDYRNENQSGHILTIED
PIEFIHQHKKSIVDQREVGIDTMSYDNALVNAMREAPDVILIGEIRERNAMKHAIAYAETGHLCISTLHANNANQAMDRI
INFFPEDARKQVLMDLSLNLRAVISMRLVPGVNNQRVAAVELLLNTPYVSDLIEKGKIDDIKEAMERSTEQGMQTFDQAL
LKLYRTGAISKENAIKYADSKNNVGLQIRLNSAGDFDSQDDSLSIEDN
Nucleotide
Download Length: 1107 bp
>NTDB_id=1060324 ACF8MK_RS01690 WP_392537916.1 416220..417326(-) (pilU) [Legionella sp. 227]
ATGGACATAACTCCTTTTTTTAAATTAATGGTCGATCGAGGGGCTTCAGACTTGTTTTTTAGTGTGGGTGCACCACCTAA
TATTAAAATTGAAGGAGTTATTTCTCCGGTGGGGCAGGCACCTCTCAAGTCGCAACAAATGGCTGAAATTGCTTTATCGC
TGATGAATGATGATCAGCGTAAAGAATTTGAGGCCACTATGGAGCTGAACATGGGGCTTTCTATTAACCAGGTTGGACGC
TTCAGAATCAATCTATTTCGTCAGCGTGGTGATATTTCAATGGTGGTGCGCTACATCAAGAATAAAATCCCTTCAATTGA
GCAGTTAAATTTACCTCTTATTTTAAAAACAATCGTGTTGGAGTTACGTGGGCTAGTTCTTGTAGTGGGTGCTACCGGTT
CGGGAAAATCAACCACTTTGGCCGCCATGATCGATTATCGGAATGAAAATCAAAGCGGTCATATTTTAACGATTGAAGAT
CCAATAGAGTTTATTCATCAACATAAAAAATCTATAGTGGATCAACGTGAAGTGGGCATTGATACGATGAGTTATGATAA
TGCTTTAGTCAATGCAATGCGGGAGGCTCCAGACGTGATTTTAATCGGTGAAATACGAGAACGTAATGCCATGAAACATG
CCATTGCCTATGCAGAGACAGGGCATTTATGTATTTCAACTTTGCATGCCAATAATGCGAACCAAGCGATGGATCGTATC
ATTAATTTTTTTCCAGAAGACGCACGAAAACAAGTCTTGATGGATTTATCCCTTAATTTGCGAGCTGTTATATCGATGCG
GCTGGTCCCCGGGGTGAATAATCAGCGTGTGGCAGCTGTGGAGCTCTTATTAAACACTCCTTATGTATCTGATTTAATCG
AGAAAGGCAAAATAGATGACATTAAGGAAGCGATGGAGCGTAGTACGGAGCAAGGTATGCAGACGTTCGATCAGGCTTTA
TTAAAATTATATCGAACTGGGGCAATTTCCAAGGAAAATGCGATCAAATATGCCGACTCGAAAAATAATGTAGGTTTACA
AATTCGTTTGAATAGTGCTGGAGATTTTGATTCACAGGATGACAGTCTAAGCATCGAAGATAATTGA
ATGGACATAACTCCTTTTTTTAAATTAATGGTCGATCGAGGGGCTTCAGACTTGTTTTTTAGTGTGGGTGCACCACCTAA
TATTAAAATTGAAGGAGTTATTTCTCCGGTGGGGCAGGCACCTCTCAAGTCGCAACAAATGGCTGAAATTGCTTTATCGC
TGATGAATGATGATCAGCGTAAAGAATTTGAGGCCACTATGGAGCTGAACATGGGGCTTTCTATTAACCAGGTTGGACGC
TTCAGAATCAATCTATTTCGTCAGCGTGGTGATATTTCAATGGTGGTGCGCTACATCAAGAATAAAATCCCTTCAATTGA
GCAGTTAAATTTACCTCTTATTTTAAAAACAATCGTGTTGGAGTTACGTGGGCTAGTTCTTGTAGTGGGTGCTACCGGTT
CGGGAAAATCAACCACTTTGGCCGCCATGATCGATTATCGGAATGAAAATCAAAGCGGTCATATTTTAACGATTGAAGAT
CCAATAGAGTTTATTCATCAACATAAAAAATCTATAGTGGATCAACGTGAAGTGGGCATTGATACGATGAGTTATGATAA
TGCTTTAGTCAATGCAATGCGGGAGGCTCCAGACGTGATTTTAATCGGTGAAATACGAGAACGTAATGCCATGAAACATG
CCATTGCCTATGCAGAGACAGGGCATTTATGTATTTCAACTTTGCATGCCAATAATGCGAACCAAGCGATGGATCGTATC
ATTAATTTTTTTCCAGAAGACGCACGAAAACAAGTCTTGATGGATTTATCCCTTAATTTGCGAGCTGTTATATCGATGCG
GCTGGTCCCCGGGGTGAATAATCAGCGTGTGGCAGCTGTGGAGCTCTTATTAAACACTCCTTATGTATCTGATTTAATCG
AGAAAGGCAAAATAGATGACATTAAGGAAGCGATGGAGCGTAGTACGGAGCAAGGTATGCAGACGTTCGATCAGGCTTTA
TTAAAATTATATCGAACTGGGGCAATTTCCAAGGAAAATGCGATCAAATATGCCGACTCGAAAAATAATGTAGGTTTACA
AATTCGTTTGAATAGTGCTGGAGATTTTGATTCACAGGATGACAGTCTAAGCATCGAAGATAATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
55.337 |
96.739 |
0.535 |
| pilU | Acinetobacter baylyi ADP1 |
52.661 |
97.011 |
0.511 |
| pilU | Vibrio cholerae strain A1552 |
47.632 |
97.554 |
0.465 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
43.953 |
92.12 |
0.405 |
| pilT | Legionella pneumophila strain ERS1305867 |
42.982 |
92.935 |
0.399 |
| pilT | Legionella pneumophila strain Lp02 |
42.982 |
92.935 |
0.399 |
| pilT | Neisseria meningitidis 8013 |
41.787 |
94.293 |
0.394 |
| pilT | Neisseria gonorrhoeae MS11 |
41.787 |
94.293 |
0.394 |
| pilT | Pseudomonas aeruginosa PAK |
42.274 |
93.207 |
0.394 |
| pilT | Acinetobacter nosocomialis M2 |
42.515 |
90.761 |
0.386 |
| pilT | Acinetobacter baumannii D1279779 |
42.515 |
90.761 |
0.386 |
| pilT | Acinetobacter baumannii strain A118 |
42.515 |
90.761 |
0.386 |
| pilT | Pseudomonas stutzeri DSM 10701 |
41.399 |
93.207 |
0.386 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
42.857 |
89.402 |
0.383 |
| pilT | Vibrio cholerae strain A1552 |
42.857 |
89.402 |
0.383 |
| pilT | Acinetobacter baylyi ADP1 |
40.294 |
92.391 |
0.372 |