Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | ACFG4S_RS10560 | Genome accession | NZ_CP170991 |
| Coordinates | 2306597..2307724 (-) | Length | 375 a.a. |
| NCBI ID | WP_392534748.1 | Uniprot ID | - |
| Organism | Nostoc sp. C117 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2301597..2312724
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACFG4S_RS10535 | - | 2302015..2302410 (-) | 396 | WP_392534743.1 | DUF309 domain-containing protein | - |
| ACFG4S_RS10540 | - | 2302407..2302772 (-) | 366 | WP_392534744.1 | ferredoxin thioredoxin reductase catalytic beta subunit | - |
| ACFG4S_RS10545 | - | 2302973..2304136 (-) | 1164 | WP_392534745.1 | DUF58 domain-containing protein | - |
| ACFG4S_RS10550 | - | 2304240..2304797 (-) | 558 | WP_392534746.1 | hypothetical protein | - |
| ACFG4S_RS10555 | - | 2305135..2306358 (-) | 1224 | WP_392534747.1 | type II secretion system F family protein | - |
| ACFG4S_RS10560 | pilT | 2306597..2307724 (-) | 1128 | WP_392534748.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| ACFG4S_RS10565 | pilB/pilB1 | 2307825..2309831 (-) | 2007 | WP_392534749.1 | GspE/PulE family protein | Machinery gene |
| ACFG4S_RS10570 | grpE | 2310370..2311107 (+) | 738 | WP_392534750.1 | nucleotide exchange factor GrpE | - |
Sequence
Protein
Download Length: 375 a.a. Molecular weight: 41039.41 Da Isoelectric Point: 7.4487
>NTDB_id=1059944 ACFG4S_RS10560 WP_392534748.1 2306597..2307724(-) (pilT) [Nostoc sp. C117]
MEMMIEDLMEQMIEMGGSDLHLSAGLPPYFRISGKLTPIGEHILTADQCQRLIFSMLNNTQRKTLEQNWELDCSYGVKGL
ARFRVNVYKDRGAYAACLRALSSKIPNFEKLGLPDIVREMCDKPRGLILVTGPTGSGKTTTLAAMIDLINRTKAEHILTV
EDPIEFVYEPIKSLVHQRQLGEDTKSFANALKAALREDPDIILVGEMRDLETISLAISAAETGHLVFGTLHTSSAAQTVD
RIIDVFPHERQTQVRVQLSNSLVAVFSQTLVSKKNPKPGEYGRVMAQEILIVTPAISNLIREGKTSQIYSAIQTGGKLGM
QTLEKVLADFYKAGTISFEAAMSKTSKPDEIQRLIGTSVPAQAAGAKPGAAAKAH
MEMMIEDLMEQMIEMGGSDLHLSAGLPPYFRISGKLTPIGEHILTADQCQRLIFSMLNNTQRKTLEQNWELDCSYGVKGL
ARFRVNVYKDRGAYAACLRALSSKIPNFEKLGLPDIVREMCDKPRGLILVTGPTGSGKTTTLAAMIDLINRTKAEHILTV
EDPIEFVYEPIKSLVHQRQLGEDTKSFANALKAALREDPDIILVGEMRDLETISLAISAAETGHLVFGTLHTSSAAQTVD
RIIDVFPHERQTQVRVQLSNSLVAVFSQTLVSKKNPKPGEYGRVMAQEILIVTPAISNLIREGKTSQIYSAIQTGGKLGM
QTLEKVLADFYKAGTISFEAAMSKTSKPDEIQRLIGTSVPAQAAGAKPGAAAKAH
Nucleotide
Download Length: 1128 bp
>NTDB_id=1059944 ACFG4S_RS10560 WP_392534748.1 2306597..2307724(-) (pilT) [Nostoc sp. C117]
ATGGAAATGATGATTGAAGATTTGATGGAGCAGATGATTGAAATGGGAGGCTCAGATCTGCATTTATCCGCCGGTTTGCC
GCCCTATTTCCGCATCAGTGGCAAACTCACTCCCATCGGTGAGCATATTTTGACGGCAGATCAGTGTCAAAGGCTGATTT
TTAGTATGCTCAATAATACCCAACGTAAGACCTTAGAACAGAACTGGGAGTTGGATTGTTCTTATGGTGTTAAAGGTTTG
GCTCGTTTTCGGGTCAATGTCTATAAAGATCGTGGTGCTTATGCTGCTTGCTTACGGGCATTAAGTTCTAAGATTCCTAA
CTTTGAAAAATTAGGTTTGCCAGATATAGTGCGGGAAATGTGCGATAAGCCCAGAGGACTTATTCTAGTCACAGGTCCTA
CAGGTTCGGGGAAAACAACAACCCTAGCGGCAATGATTGATTTGATTAACCGCACTAAAGCAGAGCATATTTTGACGGTA
GAAGATCCAATTGAATTTGTTTACGAACCAATTAAAAGCTTGGTTCACCAACGTCAATTGGGAGAAGATACTAAGAGTTT
TGCTAATGCTCTCAAAGCAGCTTTGCGGGAAGATCCAGATATTATTCTGGTGGGGGAAATGCGCGATTTGGAAACAATTT
CTTTGGCGATTTCGGCTGCAGAAACAGGACACTTGGTATTTGGTACGTTACACACCAGTTCTGCTGCACAGACTGTTGAC
CGGATTATCGACGTTTTCCCACATGAGCGACAAACCCAAGTGCGGGTGCAATTATCAAACTCACTCGTAGCAGTATTTAG
CCAAACCCTAGTATCTAAGAAAAACCCCAAACCCGGTGAATACGGTCGGGTAATGGCTCAAGAAATTCTCATCGTCACTC
CCGCTATTTCCAACTTGATTCGAGAAGGTAAAACATCGCAAATTTACTCAGCTATTCAAACTGGCGGCAAATTGGGAATG
CAAACTCTGGAGAAGGTTTTAGCCGATTTTTATAAAGCAGGAACTATCTCTTTTGAAGCCGCGATGTCTAAGACTTCTAA
GCCAGATGAAATCCAACGTCTCATCGGTACTTCTGTACCAGCGCAAGCAGCAGGTGCGAAACCTGGTGCGGCTGCCAAAG
CGCATTAA
ATGGAAATGATGATTGAAGATTTGATGGAGCAGATGATTGAAATGGGAGGCTCAGATCTGCATTTATCCGCCGGTTTGCC
GCCCTATTTCCGCATCAGTGGCAAACTCACTCCCATCGGTGAGCATATTTTGACGGCAGATCAGTGTCAAAGGCTGATTT
TTAGTATGCTCAATAATACCCAACGTAAGACCTTAGAACAGAACTGGGAGTTGGATTGTTCTTATGGTGTTAAAGGTTTG
GCTCGTTTTCGGGTCAATGTCTATAAAGATCGTGGTGCTTATGCTGCTTGCTTACGGGCATTAAGTTCTAAGATTCCTAA
CTTTGAAAAATTAGGTTTGCCAGATATAGTGCGGGAAATGTGCGATAAGCCCAGAGGACTTATTCTAGTCACAGGTCCTA
CAGGTTCGGGGAAAACAACAACCCTAGCGGCAATGATTGATTTGATTAACCGCACTAAAGCAGAGCATATTTTGACGGTA
GAAGATCCAATTGAATTTGTTTACGAACCAATTAAAAGCTTGGTTCACCAACGTCAATTGGGAGAAGATACTAAGAGTTT
TGCTAATGCTCTCAAAGCAGCTTTGCGGGAAGATCCAGATATTATTCTGGTGGGGGAAATGCGCGATTTGGAAACAATTT
CTTTGGCGATTTCGGCTGCAGAAACAGGACACTTGGTATTTGGTACGTTACACACCAGTTCTGCTGCACAGACTGTTGAC
CGGATTATCGACGTTTTCCCACATGAGCGACAAACCCAAGTGCGGGTGCAATTATCAAACTCACTCGTAGCAGTATTTAG
CCAAACCCTAGTATCTAAGAAAAACCCCAAACCCGGTGAATACGGTCGGGTAATGGCTCAAGAAATTCTCATCGTCACTC
CCGCTATTTCCAACTTGATTCGAGAAGGTAAAACATCGCAAATTTACTCAGCTATTCAAACTGGCGGCAAATTGGGAATG
CAAACTCTGGAGAAGGTTTTAGCCGATTTTTATAAAGCAGGAACTATCTCTTTTGAAGCCGCGATGTCTAAGACTTCTAA
GCCAGATGAAATCCAACGTCTCATCGGTACTTCTGTACCAGCGCAAGCAGCAGGTGCGAAACCTGGTGCGGCTGCCAAAG
CGCATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas aeruginosa PAK |
55.043 |
92.533 |
0.509 |
| pilT | Pseudomonas stutzeri DSM 10701 |
54.155 |
93.067 |
0.504 |
| pilT | Acinetobacter baylyi ADP1 |
53.602 |
92.533 |
0.496 |
| pilT | Legionella pneumophila strain Lp02 |
53.314 |
92.533 |
0.493 |
| pilT | Legionella pneumophila strain ERS1305867 |
53.314 |
92.533 |
0.493 |
| pilT | Acinetobacter baumannii strain A118 |
52.738 |
92.533 |
0.488 |
| pilT | Acinetobacter nosocomialis M2 |
52.738 |
92.533 |
0.488 |
| pilT | Acinetobacter baumannii D1279779 |
52.738 |
92.533 |
0.488 |
| pilT | Neisseria gonorrhoeae MS11 |
51.327 |
90.4 |
0.464 |
| pilT | Neisseria meningitidis 8013 |
51.032 |
90.4 |
0.461 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
49.143 |
93.333 |
0.459 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
50 |
91.2 |
0.456 |
| pilT | Vibrio cholerae strain A1552 |
50 |
91.2 |
0.456 |
| pilU | Acinetobacter baylyi ADP1 |
38.398 |
96.533 |
0.371 |
| pilU | Pseudomonas stutzeri DSM 10701 |
38.81 |
94.133 |
0.365 |