Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   ACES2E_RS19495 Genome accession   NZ_CP169237
Coordinates   4016983..4018083 (+) Length   366 a.a.
NCBI ID   WP_374076420.1    Uniprot ID   -
Organism   Bdellovibrio bacteriovorus strain Bd3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4011983..4023083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACES2E_RS19475 (ACES2E_19475) rpmA 4012543..4012803 (-) 261 WP_011166148.1 50S ribosomal protein L27 -
  ACES2E_RS19480 (ACES2E_19480) rplU 4013109..4013402 (-) 294 WP_374076416.1 50S ribosomal protein L21 -
  ACES2E_RS19485 (ACES2E_19485) - 4013609..4015078 (-) 1470 WP_374076418.1 hypothetical protein -
  ACES2E_RS19490 (ACES2E_19490) - 4015322..4016841 (-) 1520 Protein_3852 ribonuclease E/G -
  ACES2E_RS19495 (ACES2E_19495) pilT 4016983..4018083 (+) 1101 WP_374076420.1 type IV pilus twitching motility protein PilT Machinery gene
  ACES2E_RS19500 (ACES2E_19500) - 4018087..4018461 (-) 375 WP_374076422.1 hypothetical protein -
  ACES2E_RS19505 (ACES2E_19505) deoC 4018521..4019183 (+) 663 WP_374076424.1 deoxyribose-phosphate aldolase -
  ACES2E_RS19510 (ACES2E_19510) - 4019183..4020502 (+) 1320 WP_374076426.1 thymidine phosphorylase -
  ACES2E_RS19515 (ACES2E_19515) - 4020535..4021350 (+) 816 WP_374076428.1 purine-nucleoside phosphorylase -
  ACES2E_RS19520 (ACES2E_19520) - 4021539..4022771 (+) 1233 WP_374076430.1 S8 family peptidase -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 39632.78 Da        Isoelectric Point: 7.9844

>NTDB_id=1049942 ACES2E_RS19495 WP_374076420.1 4016983..4018083(+) (pilT) [Bdellovibrio bacteriovorus strain Bd3]
MATIDELFKLMVEQGASDLHITSGAPPYLRLHGNMVPLNYRELTNQDVQGLLFEILSEKQKKAFVEKWELDFAYTLSGIG
RFRCNIFMQRKGLGAVMRIIPEKIKTAQELGVPPSVMDLIDCDRGLILVTGPTGSGKSTTLAAMIHQINMTREAHIITVE
DPIEFVHPNLKALVNQREVGSHTKSFANALKAALREDPDILLVGELRDLETISLALTAAETGHIVFGTLHTNSAAKTIDR
IIDVFPAGQQQQIRTMLAESLRGVVAQTLFSRADGQGRVAAYEILRNTKAISNLIREGKVHQIASAMQTGSAQGMILFEK
YIEDLVRKGKVSAADAKTFLGVAGSGGDTVAGTMAGSAAGPRTKVG

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=1049942 ACES2E_RS19495 WP_374076420.1 4016983..4018083(+) (pilT) [Bdellovibrio bacteriovorus strain Bd3]
ATGGCAACAATTGATGAACTGTTTAAACTCATGGTGGAACAAGGAGCTTCCGACTTGCACATAACAAGCGGCGCGCCTCC
TTATCTTCGCCTTCATGGAAACATGGTTCCATTGAACTATCGCGAACTCACGAATCAAGACGTGCAAGGTTTGCTCTTCG
AAATTCTTTCCGAAAAGCAAAAGAAAGCCTTCGTTGAAAAATGGGAGCTGGATTTCGCCTACACTCTTTCAGGCATCGGT
CGTTTTCGTTGCAATATCTTTATGCAAAGAAAAGGGCTTGGCGCCGTTATGCGTATCATCCCAGAGAAAATTAAAACAGC
GCAAGAATTGGGAGTTCCACCTTCTGTAATGGATTTGATCGACTGTGATCGCGGTTTGATCCTTGTAACGGGTCCAACGG
GTTCAGGTAAATCTACAACTCTTGCTGCGATGATCCATCAAATCAACATGACTCGTGAAGCCCACATCATCACGGTGGAA
GATCCTATCGAGTTCGTTCATCCGAACTTGAAAGCTCTGGTGAATCAACGTGAAGTCGGAAGTCATACGAAGAGTTTTGC
CAACGCTTTGAAAGCGGCTCTGCGTGAAGACCCGGATATCTTGCTCGTGGGTGAGTTGCGTGACTTGGAAACGATCTCTT
TGGCGCTGACTGCGGCGGAAACAGGTCACATTGTGTTCGGTACTCTTCACACGAACAGTGCGGCTAAAACTATTGACCGT
ATCATTGACGTTTTCCCTGCGGGACAACAACAACAAATCCGTACGATGTTAGCAGAGAGTTTGCGTGGCGTTGTCGCGCA
AACACTTTTCTCTCGCGCCGACGGACAAGGTCGTGTCGCTGCTTATGAAATTCTAAGAAATACAAAAGCCATCTCGAACT
TGATTCGTGAAGGTAAAGTCCATCAGATTGCTTCGGCAATGCAGACGGGCTCTGCTCAGGGTATGATCCTCTTCGAAAAA
TACATCGAAGATCTGGTTCGCAAAGGAAAAGTTTCTGCGGCAGACGCGAAAACTTTCTTGGGAGTTGCTGGAAGTGGTGG
CGATACCGTTGCGGGAACTATGGCCGGAAGTGCTGCCGGCCCTCGCACCAAAGTTGGTTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(13-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.685

99.727

0.505
  pilT Pseudomonas aeruginosa PAK

54.79

91.257

0.5
  pilT Acinetobacter baumannii D1279779

54.328

91.53

0.497
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

54.328

91.53

0.497
  pilT Vibrio cholerae strain A1552

54.328

91.53

0.497
  pilT Acinetobacter baumannii strain A118

54.328

91.53

0.497
  pilT Acinetobacter nosocomialis M2

54.328

91.53

0.497
  pilT Pseudomonas stutzeri DSM 10701

54.192

91.257

0.495
  pilT Acinetobacter baylyi ADP1

53.892

91.257

0.492
  pilT Legionella pneumophila strain Lp02

54.407

89.891

0.489
  pilT Legionella pneumophila strain ERS1305867

54.407

89.891

0.489
  pilT Neisseria meningitidis 8013

51.198

91.257

0.467
  pilT Neisseria gonorrhoeae MS11

51.198

91.257

0.467
  pilU Pseudomonas stutzeri DSM 10701

42.73

92.077

0.393
  pilU Vibrio cholerae strain A1552

41.716

92.35

0.385
  pilU Acinetobacter baylyi ADP1

41.617

91.257

0.38

Multiple sequence alignment