Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   ACES2M_RS17530 Genome accession   NZ_CP168972
Coordinates   3592092..3593189 (+) Length   365 a.a.
NCBI ID   WP_350159279.1    Uniprot ID   -
Organism   Bdellovibrio bacteriovorus strain Bd19     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3587092..3598189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACES2M_RS17505 (ACES2M_17505) rpmA 3587294..3587554 (-) 261 WP_284607521.1 50S ribosomal protein L27 -
  ACES2M_RS17510 (ACES2M_17510) rplU 3587584..3588150 (-) 567 WP_284607523.1 50S ribosomal protein L21 -
  ACES2M_RS17515 (ACES2M_17515) - 3588356..3589819 (-) 1464 WP_284607524.1 hypothetical protein -
  ACES2M_RS17520 (ACES2M_17520) - 3590169..3590447 (+) 279 WP_284607525.1 helix-turn-helix domain-containing protein -
  ACES2M_RS17525 (ACES2M_17525) - 3590469..3591986 (-) 1518 WP_374029452.1 ribonuclease E/G -
  ACES2M_RS17530 (ACES2M_17530) pilT 3592092..3593189 (+) 1098 WP_350159279.1 type IV pilus twitching motility protein PilT Machinery gene
  ACES2M_RS17535 (ACES2M_17535) - 3593190..3593564 (-) 375 WP_284607851.1 hypothetical protein -
  ACES2M_RS17540 (ACES2M_17540) deoC 3593624..3594286 (+) 663 WP_284607850.1 deoxyribose-phosphate aldolase -
  ACES2M_RS17545 (ACES2M_17545) - 3594288..3595607 (+) 1320 WP_284607849.1 thymidine phosphorylase -
  ACES2M_RS17550 (ACES2M_17550) - 3595635..3596450 (+) 816 WP_284607848.1 purine-nucleoside phosphorylase -
  ACES2M_RS17555 (ACES2M_17555) - 3596630..3597862 (+) 1233 WP_374029453.1 S8 family peptidase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 39691.88 Da        Isoelectric Point: 7.9844

>NTDB_id=1049053 ACES2M_RS17530 WP_350159279.1 3592092..3593189(+) (pilT) [Bdellovibrio bacteriovorus strain Bd19]
MATIDELFKLMVEQGASDLHITSGAPPYLRLHGNMVPLNYRELTNQDVQGLLFEILSEKQKKAFVEKWELDFAYTLSGIG
RFRCNIFMQRKGLGAVMRIIPEKIKTAQELGLPPAIMDMIDCDRGLILVTGPTGSGKSTSLAAMIHQINMTREAHIITVE
DPIEFVHPNLKALVNQREVGSHTKSFANALKAALREDPDILLVGELRDLETISLALTAAETGHIVFGTLHTNSAAKTIDR
IIDVFPAGQQQQIRTMLAESLRGVVAQTLFSRADGQGRVAAYEIMRNTKAIANLIREGKVHQIPSAMQTGSSQGMVLFEK
YIEDLVRKGKVSAADAKTFLGQAGGGDTAIGTMAGTAGNPRTKVG

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=1049053 ACES2M_RS17530 WP_350159279.1 3592092..3593189(+) (pilT) [Bdellovibrio bacteriovorus strain Bd19]
ATGGCTACAATTGATGAACTGTTTAAACTCATGGTAGAACAAGGTGCTTCCGACTTGCACATCACAAGCGGCGCTCCTCC
CTATCTTCGTCTCCATGGAAACATGGTTCCATTGAATTATCGCGAGCTTACAAATCAGGACGTGCAAGGTTTGCTCTTCG
AAATTTTGTCTGAGAAACAAAAGAAAGCTTTCGTTGAAAAATGGGAGCTGGATTTTGCCTACACGCTTTCAGGCATCGGT
CGTTTCCGTTGCAATATCTTTATGCAGCGTAAAGGACTCGGGGCGGTTATGCGTATCATCCCAGAGAAAATTAAAACCGC
GCAAGAGTTGGGATTGCCTCCTGCAATCATGGACATGATTGATTGTGATCGCGGTCTTATTCTTGTTACGGGTCCAACGG
GTTCGGGTAAATCAACGTCGCTGGCGGCGATGATTCACCAAATCAACATGACTCGTGAAGCTCACATCATCACTGTTGAA
GATCCTATCGAGTTCGTTCATCCGAATTTGAAAGCCTTGGTGAATCAACGTGAAGTCGGAAGTCACACGAAAAGTTTCGC
CAACGCTTTGAAGGCGGCTCTGCGTGAAGACCCGGATATCTTGCTTGTGGGTGAGTTGCGTGACTTGGAGACTATCTCTT
TGGCTTTGACGGCAGCGGAGACAGGTCACATTGTTTTCGGAACTCTGCACACGAACAGTGCCGCAAAAACTATTGACCGT
ATCATTGACGTTTTCCCTGCGGGACAACAGCAACAAATCCGTACGATGCTTGCAGAAAGTTTGCGCGGAGTTGTGGCGCA
AACTCTTTTCTCGCGCGCTGACGGACAAGGGCGGGTTGCCGCTTACGAGATTATGAGAAACACAAAAGCCATTGCGAACT
TGATTCGTGAAGGTAAAGTGCACCAAATTCCTTCGGCGATGCAAACCGGTTCTAGCCAGGGGATGGTTCTGTTTGAAAAA
TACATCGAAGACTTGGTTCGTAAAGGGAAAGTCTCTGCAGCGGATGCAAAAACTTTCTTGGGTCAAGCTGGCGGTGGCGA
CACAGCGATTGGCACCATGGCAGGAACTGCCGGGAATCCAAGAACGAAAGTCGGCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(13-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Pseudomonas aeruginosa PAK

55.09

91.507

0.504
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.275

99.726

0.501
  pilT Acinetobacter baumannii strain A118

54.627

91.781

0.501
  pilT Acinetobacter baumannii D1279779

54.627

91.781

0.501
  pilT Acinetobacter nosocomialis M2

54.627

91.781

0.501
  pilT Pseudomonas stutzeri DSM 10701

54.491

91.507

0.499
  pilT Acinetobacter baylyi ADP1

54.192

91.507

0.496
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

54.03

91.781

0.496
  pilT Vibrio cholerae strain A1552

54.03

91.781

0.496
  pilT Legionella pneumophila strain Lp02

54.711

90.137

0.493
  pilT Legionella pneumophila strain ERS1305867

54.711

90.137

0.493
  pilT Neisseria meningitidis 8013

50.299

91.507

0.46
  pilT Neisseria gonorrhoeae MS11

50.299

91.507

0.46
  pilU Pseudomonas stutzeri DSM 10701

43.027

92.329

0.397
  pilU Acinetobacter baylyi ADP1

41.317

91.507

0.378
  pilU Vibrio cholerae strain A1552

41.718

89.315

0.373

Multiple sequence alignment