Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   ACES2L_RS15935 Genome accession   NZ_CP168971
Coordinates   3372460..3373557 (+) Length   365 a.a.
NCBI ID   WP_374715237.1    Uniprot ID   -
Organism   Bdellovibrio bacteriovorus strain Bd16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3367460..3378557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACES2L_RS15910 (ACES2L_15910) rpmA 3367502..3367762 (-) 261 WP_243536427.1 50S ribosomal protein L27 -
  ACES2L_RS15915 (ACES2L_15915) rplU 3367793..3368350 (-) 558 WP_374715233.1 50S ribosomal protein L21 -
  ACES2L_RS15920 (ACES2L_15920) - 3368558..3370018 (-) 1461 WP_374715234.1 hypothetical protein -
  ACES2L_RS15925 (ACES2L_15925) - 3370477..3370776 (+) 300 WP_374715235.1 helix-turn-helix domain-containing protein -
  ACES2L_RS15930 (ACES2L_15930) - 3370813..3372330 (-) 1518 WP_374715236.1 ribonuclease E/G -
  ACES2L_RS15935 (ACES2L_15935) pilT 3372460..3373557 (+) 1098 WP_374715237.1 type IV pilus twitching motility protein PilT Machinery gene
  ACES2L_RS15940 (ACES2L_15940) - 3373558..3373929 (-) 372 WP_374715238.1 hypothetical protein -
  ACES2L_RS15945 (ACES2L_15945) deoC 3373989..3374651 (+) 663 WP_374715239.1 deoxyribose-phosphate aldolase -
  ACES2L_RS15950 (ACES2L_15950) - 3374651..3375970 (+) 1320 WP_374715240.1 thymidine phosphorylase -
  ACES2L_RS15955 (ACES2L_15955) - 3375981..3376796 (+) 816 WP_374715241.1 purine-nucleoside phosphorylase -
  ACES2L_RS15960 (ACES2L_15960) - 3377006..3378238 (+) 1233 WP_374715242.1 S8 family peptidase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 39796.91 Da        Isoelectric Point: 7.9844

>NTDB_id=1049041 ACES2L_RS15935 WP_374715237.1 3372460..3373557(+) (pilT) [Bdellovibrio bacteriovorus strain Bd16]
MATIDELFKLMVEQGASDLHITSGAPPYLRLHGNMVPLNYRELTNQDVQGLLFEILSEKQKKAFVEKWELDFAYTLSGIG
RFRCNIFMQRKGLGAVMRIIPEKIKTAQELGLPPAVMDMIDCDRGLILVTGPTGSGKSTTLAAMIHQINMTREAHIITVE
DPIEFVHPNLKSLVNQREVGSHTKSFANALKAALREDPDILLVGELRDLETISLALTAAETGHIVFGTLHTNSAAKTVDR
IIDVFPAGQQQQIRTMLAESLRGVVAQTLFTRADGQGRVAAYEIMRNTKAISNLIREGKVHQLASAMQTGSSQGMVLFEK
YIEDLVRKGKVSAADAKTFLGQAGSGGDTAIQPTAATQATRTKVG

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=1049041 ACES2L_RS15935 WP_374715237.1 3372460..3373557(+) (pilT) [Bdellovibrio bacteriovorus strain Bd16]
ATGGCAACAATTGATGAACTGTTTAAATTGATGGTGGAACAAGGAGCTTCCGACTTGCATATCACAAGCGGCGCGCCTCC
TTACCTTCGACTTCATGGAAACATGGTGCCTCTGAATTACCGCGAATTGACGAACCAAGACGTACAAGGTTTGCTCTTCG
AAATTCTATCAGAAAAACAAAAGAAAGCCTTCGTTGAAAAATGGGAGCTTGATTTCGCTTACACTCTTTCTGGAATTGGT
CGTTTCCGTTGCAATATCTTTATGCAGCGTAAAGGACTTGGCGCAGTAATGCGTATCATCCCTGAGAAAATTAAAACAGC
GCAAGAGTTAGGATTACCTCCTGCGGTGATGGATATGATCGATTGTGATCGTGGTTTGATCCTTGTTACGGGTCCCACAG
GTTCTGGTAAATCAACGACCTTGGCTGCTATGATTCATCAAATCAATATGACTCGTGAAGCTCATATCATCACGGTTGAA
GATCCTATCGAGTTCGTTCACCCGAATTTGAAATCGCTAGTAAACCAACGTGAGGTTGGAAGTCATACTAAAAGCTTTGC
TAACGCCTTAAAAGCGGCCTTACGTGAAGACCCGGATATCTTGCTGGTGGGTGAGTTGCGTGACCTTGAAACCATTTCCC
TAGCCTTGACTGCTGCGGAAACGGGTCACATCGTGTTTGGTACTCTTCATACGAACAGTGCTGCTAAAACCGTAGATCGT
ATCATTGACGTTTTCCCTGCTGGTCAACAACAACAAATCCGTACGATGCTTGCAGAAAGTTTGCGTGGCGTAGTGGCGCA
GACTTTATTTACGCGCGCTGACGGACAAGGTCGTGTGGCTGCTTACGAAATCATGCGTAATACGAAAGCCATCTCGAATC
TTATTCGTGAAGGTAAAGTGCATCAGCTGGCTTCTGCAATGCAAACAGGCTCTAGCCAAGGTATGGTTCTGTTTGAAAAA
TACATTGAGGATCTGGTTCGTAAAGGTAAGGTTTCTGCAGCCGATGCAAAAACCTTCCTGGGTCAGGCTGGCAGCGGTGG
CGACACAGCCATTCAACCAACGGCTGCGACTCAAGCAACCCGCACCAAAGTGGGTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(13-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter baumannii D1279779

54.094

93.699

0.507
  pilT Acinetobacter baumannii strain A118

54.094

93.699

0.507
  pilT Acinetobacter nosocomialis M2

54.094

93.699

0.507
  pilT Pseudomonas aeruginosa PAK

55.09

91.507

0.504
  pilT Pseudomonas stutzeri DSM 10701

54.491

91.507

0.499
  pilT Acinetobacter baylyi ADP1

54.192

91.507

0.496
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

54.03

91.781

0.496
  pilT Vibrio cholerae strain A1552

54.03

91.781

0.496
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.478

93.973

0.493
  pilT Legionella pneumophila strain Lp02

54.711

90.137

0.493
  pilT Legionella pneumophila strain ERS1305867

54.711

90.137

0.493
  pilT Neisseria gonorrhoeae MS11

50.898

91.507

0.466
  pilT Neisseria meningitidis 8013

50.898

91.507

0.466
  pilU Pseudomonas stutzeri DSM 10701

42.407

95.616

0.405
  pilU Acinetobacter baylyi ADP1

39.554

98.356

0.389
  pilU Vibrio cholerae strain A1552

41.716

92.603

0.386

Multiple sequence alignment