Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   ACES2G_RS17715 Genome accession   NZ_CP168968
Coordinates   3705924..3707024 (+) Length   366 a.a.
NCBI ID   WP_347355766.1    Uniprot ID   -
Organism   Bdellovibrio bacteriovorus strain Bd5     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3700924..3712024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACES2G_RS17695 (ACES2G_17695) rpmA 3701545..3701805 (-) 261 WP_284607521.1 50S ribosomal protein L27 -
  ACES2G_RS17700 (ACES2G_17700) rplU 3701835..3702398 (-) 564 WP_374000901.1 50S ribosomal protein L21 -
  ACES2G_RS17705 (ACES2G_17705) - 3702606..3704213 (-) 1608 WP_374000902.1 hypothetical protein -
  ACES2G_RS17710 (ACES2G_17710) - 3704269..3705786 (-) 1518 WP_347355768.1 Rne/Rng family ribonuclease -
  ACES2G_RS17715 (ACES2G_17715) pilT 3705924..3707024 (+) 1101 WP_347355766.1 type IV pilus twitching motility protein PilT Machinery gene
  ACES2G_RS17720 (ACES2G_17720) - 3707030..3707404 (-) 375 WP_347355764.1 hypothetical protein -
  ACES2G_RS17725 (ACES2G_17725) deoC 3707464..3708126 (+) 663 WP_374000904.1 deoxyribose-phosphate aldolase -
  ACES2G_RS17730 (ACES2G_17730) - 3708126..3708731 (+) 606 WP_374000905.1 thymidine phosphorylase -
  ACES2G_RS17735 (ACES2G_17735) - 3708695..3709444 (+) 750 WP_374000906.1 hypothetical protein -
  ACES2G_RS17740 (ACES2G_17740) - 3709501..3710289 (+) 789 WP_374001916.1 purine-nucleoside phosphorylase -
  ACES2G_RS17745 (ACES2G_17745) - 3710434..3711663 (+) 1230 WP_374000907.1 S8 family peptidase -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 39690.73 Da        Isoelectric Point: 7.9844

>NTDB_id=1049020 ACES2G_RS17715 WP_347355766.1 3705924..3707024(+) (pilT) [Bdellovibrio bacteriovorus strain Bd5]
MATIDELFKLMVEQGASDLHITSGAAPYLRLHGNMVPLNYRELTNQDVQGLLFEILSEKQKKAFVEKWELDFAYTLPGTG
RFRCNIFMQRKGLGAVMRIIPEKIKTAQELGVPPSVMDIIDCDRGLILVTGPTGSGKSTTLAAMIHQINMTREAHIITVE
DPIEFVHPNLKSLVNQREVGSHTKSFANALKAALREDPDILLVGELRDLETISLALTAAETGHIVFGTLHTNSAAKTIDR
IIDVFPAGQQQQIRTMLAESLRGVVAQTLFSRADGQGRVAAYEIMRNTKAISNLIREGKVHQIPSAMQTGSSQGMVLFEK
YIEDLVRKGKVSAADAKTFLGQAGGGDTSVQTAVGGAAGGPRTKVG

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=1049020 ACES2G_RS17715 WP_347355766.1 3705924..3707024(+) (pilT) [Bdellovibrio bacteriovorus strain Bd5]
ATGGCAACAATTGATGAACTGTTTAAACTCATGGTCGAACAAGGAGCTTCCGACTTGCACATCACAAGTGGAGCAGCCCC
TTATTTGCGCCTGCACGGAAACATGGTTCCATTGAACTATCGCGAACTCACGAACCAAGACGTGCAAGGTTTGCTTTTTG
AGATCCTTTCTGAAAAGCAAAAGAAAGCCTTTGTTGAAAAGTGGGAGCTGGATTTCGCCTACACTTTGCCAGGCACGGGT
CGTTTCCGTTGCAATATCTTTATGCAGCGTAAAGGCCTTGGCGCCGTTATGCGTATTATTCCTGAGAAAATCAAAACCGC
GCAAGAGCTGGGTGTGCCACCATCCGTGATGGACATCATCGACTGCGATCGCGGTCTGATTCTGGTGACAGGTCCTACCG
GTTCCGGTAAATCCACCACTTTGGCAGCGATGATTCACCAAATTAACATGACTCGTGAAGCGCACATCATCACGGTGGAA
GATCCTATCGAGTTCGTTCACCCGAATTTAAAATCTCTGGTCAACCAACGTGAAGTCGGAAGCCATACCAAGAGCTTTGC
CAACGCCCTGAAAGCAGCGCTGCGTGAAGATCCAGATATTCTGTTGGTGGGTGAGTTGCGTGACTTGGAAACGATTTCTT
TGGCCCTGACGGCAGCAGAAACCGGACATATCGTCTTCGGAACTTTGCATACCAACAGTGCTGCCAAAACCATTGACCGT
ATCATCGACGTTTTCCCTGCGGGACAACAACAGCAGATCCGTACAATGCTGGCGGAAAGCTTGCGTGGAGTTGTCGCTCA
AACACTGTTCTCGCGCGCGGACGGACAAGGTCGTGTCGCCGCTTACGAGATCATGAGAAACACCAAAGCGATTTCCAACT
TGATTCGTGAAGGTAAGGTCCACCAAATCCCATCTGCGATGCAGACGGGCTCCAGTCAGGGGATGGTATTGTTCGAAAAA
TACATCGAAGATCTGGTTCGCAAAGGAAAGGTTTCCGCAGCCGATGCAAAAACCTTCCTGGGCCAGGCCGGCGGTGGCGA
CACCAGCGTGCAGACAGCCGTGGGTGGCGCTGCGGGTGGTCCGCGCACGAAAGTGGGCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(12-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Pseudomonas aeruginosa PAK

55.389

91.257

0.505
  pilT Pseudomonas stutzeri DSM 10701

55.09

91.257

0.503
  pilT Acinetobacter baumannii strain A118

54.925

91.53

0.503
  pilT Acinetobacter nosocomialis M2

54.925

91.53

0.503
  pilT Acinetobacter baumannii D1279779

54.925

91.53

0.503
  pilT Vibrio cholerae strain A1552

54.627

91.53

0.5
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

54.627

91.53

0.5
  pilT Acinetobacter baylyi ADP1

54.491

91.257

0.497
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.77

93.716

0.495
  pilT Legionella pneumophila strain Lp02

54.103

89.891

0.486
  pilT Legionella pneumophila strain ERS1305867

54.103

89.891

0.486
  pilT Neisseria gonorrhoeae MS11

51.497

91.257

0.47
  pilT Neisseria meningitidis 8013

51.497

91.257

0.47
  pilU Pseudomonas stutzeri DSM 10701

39.889

98.634

0.393
  pilU Acinetobacter baylyi ADP1

41.018

91.257

0.374
  pilU Vibrio cholerae strain A1552

41.104

89.071

0.366

Multiple sequence alignment