Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ABGU81_RS18265 Genome accession   NZ_OZ039398
Coordinates   3671557..3672162 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli isolate 30348_2#256     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3666557..3677162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU81_RS18245 aes 3666698..3667657 (+) 960 WP_000801794.1 acetyl esterase -
  ABGU81_RS18250 hemH 3667654..3668616 (-) 963 WP_001250114.1 ferrochelatase -
  ABGU81_RS18255 adk 3668748..3669392 (-) 645 WP_001220233.1 adenylate kinase -
  ABGU81_RS18260 htpG 3669573..3671447 (-) 1875 WP_000678189.1 molecular chaperone HtpG -
  ABGU81_RS18265 recR 3671557..3672162 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  ABGU81_RS18270 ybaB 3672162..3672491 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  ABGU81_RS18275 dnaX 3672544..3674475 (-) 1932 WP_000122044.1 DNA polymerase III subunit gamma/tau -
  ABGU81_RS18280 apt 3674604..3675155 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  ABGU81_RS18285 ybaN 3675308..3675685 (-) 378 WP_001188900.1 DUF454 family protein -
  ABGU81_RS18290 priC 3675755..3676282 (+) 528 WP_000844862.1 primosomal replication protein N'' -
  ABGU81_RS18295 rsmS 3676296..3676460 (+) 165 WP_000051144.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=1049013 ABGU81_RS18265 WP_001195025.1 3671557..3672162(-) (recR) [Escherichia coli isolate 30348_2#256]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1049013 ABGU81_RS18265 WP_001195025.1 3671557..3672162(-) (recR) [Escherichia coli isolate 30348_2#256]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGTCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATCGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment