Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   ACES2F_RS17370 Genome accession   NZ_CP168967
Coordinates   3670227..3671324 (+) Length   365 a.a.
NCBI ID   WP_063242669.1    Uniprot ID   A0A150WWG0
Organism   Bdellovibrio bacteriovorus strain Bd4     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3665227..3676324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACES2F_RS17345 (ACES2F_17345) rpmA 3665630..3665890 (-) 261 WP_011166148.1 50S ribosomal protein L27 -
  ACES2F_RS17350 (ACES2F_17350) rplU 3665917..3666474 (-) 558 WP_063205655.1 50S ribosomal protein L21 -
  ACES2F_RS17355 (ACES2F_17355) - 3666683..3668158 (-) 1476 WP_373998568.1 hypothetical protein -
  ACES2F_RS17360 (ACES2F_17360) - 3668317..3668628 (+) 312 WP_063242565.1 helix-turn-helix domain-containing protein -
  ACES2F_RS17365 (ACES2F_17365) - 3668588..3670108 (-) 1521 WP_063242566.1 Rne/Rng family ribonuclease -
  ACES2F_RS17370 (ACES2F_17370) pilT 3670227..3671324 (+) 1098 WP_063242669.1 type IV pilus twitching motility protein PilT Machinery gene
  ACES2F_RS17375 (ACES2F_17375) - 3671325..3671699 (-) 375 WP_373998569.1 hypothetical protein -
  ACES2F_RS17380 (ACES2F_17380) deoC 3671760..3672422 (+) 663 WP_063205666.1 deoxyribose-phosphate aldolase -
  ACES2F_RS17385 (ACES2F_17385) - 3672422..3673741 (+) 1320 WP_063205667.1 thymidine phosphorylase -
  ACES2F_RS17390 (ACES2F_17390) - 3673769..3674584 (+) 816 WP_063205669.1 purine-nucleoside phosphorylase -
  ACES2F_RS17395 (ACES2F_17395) - 3674814..3676043 (+) 1230 WP_373998570.1 S8 family peptidase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 39677.79 Da        Isoelectric Point: 7.9844

>NTDB_id=1049013 ACES2F_RS17370 WP_063242669.1 3670227..3671324(+) (pilT) [Bdellovibrio bacteriovorus strain Bd4]
MATIDELFKLMVEQGASDLHITSGAPPYLRLHGNMIPLNYRELTNQDVQGLLFEILSEKQKKAFVEKWELDFAYTLSGIG
RFRCNIFMQRKGLGAVMRIIPEKIKTAQELGLPPAVMDMIDCDRGLILVTGPTGSGKSTTLAAMIHQINATREAHIITVE
DPIEFVHPNLKALVNQREVGSHTKSFANALKAALREDPDILLVGELRDLETISLALTAAETGHIVFGTLHTNSAAKTVDR
IIDVFPAGQQQQIRTMLAESLRGVVAQTLFSRADGQGRVAAYEIMRNTKAISNLIREGKVHQIPSAMQTGSSQGMVLFEK
YIEDLVRKGKVSAADAKTFLGQAGGGDTTIQGTMAGGSAPRTKVG

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=1049013 ACES2F_RS17370 WP_063242669.1 3670227..3671324(+) (pilT) [Bdellovibrio bacteriovorus strain Bd4]
ATGGCAACAATTGATGAACTGTTCAAACTCATGGTGGAACAAGGAGCCTCCGACTTGCACATTACAAGCGGTGCACCTCC
GTATTTGCGTCTCCATGGAAACATGATTCCGTTGAACTATCGCGAATTGACGAACCAAGACGTACAAGGTTTGCTCTTCG
AGATTCTTTCTGAGAAGCAGAAAAAAGCCTTTGTCGAAAAATGGGAACTGGATTTCGCTTACACTCTTTCAGGCATTGGA
CGTTTTCGTTGCAATATCTTTATGCAAAGAAAAGGTCTTGGCGCCGTTATGCGTATCATTCCAGAAAAAATTAAAACGGC
ACAAGAATTGGGTTTACCTCCAGCAGTGATGGACATGATCGATTGCGATCGTGGTTTGATTCTAGTTACCGGCCCTACGG
GTTCGGGTAAATCAACAACGCTCGCTGCGATGATCCATCAGATCAACGCCACTCGTGAAGCGCATATCATCACGGTGGAA
GACCCGATCGAGTTCGTACATCCCAACTTAAAAGCCTTGGTGAATCAACGTGAAGTTGGAAGTCACACGAAAAGTTTCGC
GAACGCCTTGAAAGCGGCTCTGCGTGAAGACCCAGATATCTTGCTTGTCGGTGAGTTGCGTGACTTAGAAACTATTTCGT
TAGCCTTGACGGCTGCAGAAACAGGTCACATCGTGTTTGGTACTCTTCACACGAACAGTGCCGCTAAAACTGTCGATCGT
ATCATTGACGTTTTCCCTGCGGGTCAACAACAACAAATCCGTACGATGCTTGCGGAAAGTTTGCGTGGAGTCGTCGCGCA
AACACTTTTCTCGCGCGCCGATGGGCAAGGTCGTGTGGCCGCTTACGAAATCATGCGTAATACAAAAGCCATCTCGAACT
TGATTCGTGAAGGTAAAGTCCATCAAATCCCTTCAGCCATGCAAACGGGCTCAAGTCAGGGTATGGTACTTTTCGAAAAA
TACATCGAAGACTTGGTTCGCAAAGGAAAGGTTTCTGCAGCCGATGCAAAAACTTTCTTGGGTCAAGCTGGCGGTGGCGA
TACAACGATTCAAGGAACTATGGCGGGAGGCTCTGCCCCACGCACCAAAGTTGGCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(13-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A150WWG0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Pseudomonas aeruginosa PAK

55.09

91.507

0.504
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.549

99.726

0.504
  pilT Acinetobacter baumannii strain A118

54.627

91.781

0.501
  pilT Acinetobacter nosocomialis M2

54.627

91.781

0.501
  pilT Acinetobacter baumannii D1279779

54.627

91.781

0.501
  pilT Pseudomonas stutzeri DSM 10701

54.491

91.507

0.499
  pilT Vibrio cholerae strain A1552

54.328

91.781

0.499
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

54.328

91.781

0.499
  pilT Acinetobacter baylyi ADP1

54.192

91.507

0.496
  pilT Legionella pneumophila strain ERS1305867

54.711

90.137

0.493
  pilT Legionella pneumophila strain Lp02

54.711

90.137

0.493
  pilT Neisseria gonorrhoeae MS11

50.898

91.507

0.466
  pilT Neisseria meningitidis 8013

50.898

91.507

0.466
  pilU Pseudomonas stutzeri DSM 10701

42.433

92.329

0.392
  pilU Acinetobacter baylyi ADP1

41.317

91.507

0.378
  pilU Vibrio cholerae strain A1552

41.718

89.315

0.373

Multiple sequence alignment