Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   ABQX00_RS15840 Genome accession   NZ_CP168205
Coordinates   3657026..3657439 (+) Length   137 a.a.
NCBI ID   WP_104567528.1    Uniprot ID   -
Organism   Xanthomonas arboricola strain WHRI 5708     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3652026..3662439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQX00_RS15815 (ABQX00_015815) pilB 3652056..3653792 (-) 1737 WP_349783004.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABQX00_RS15820 (ABQX00_015820) - 3653885..3654493 (-) 609 WP_349783006.1 methionine biosynthesis protein MetW -
  ABQX00_RS15825 (ABQX00_015825) - 3654486..3655526 (-) 1041 WP_104567525.1 glycosyltransferase -
  ABQX00_RS15830 (ABQX00_015830) - 3655523..3656320 (-) 798 WP_349783008.1 glycosyltransferase family 2 protein -
  ABQX00_RS15835 (ABQX00_015835) - 3656322..3656702 (-) 381 WP_104567527.1 SMR family transporter -
  ABQX00_RS15840 (ABQX00_015840) comP 3657026..3657439 (+) 414 WP_104567528.1 pilin Machinery gene
  ABQX00_RS15845 (ABQX00_015845) - 3657502..3659463 (+) 1962 WP_349783010.1 hypothetical protein -
  ABQX00_RS15850 (ABQX00_015850) pilC 3659575..3660837 (+) 1263 WP_104567539.1 type II secretion system F family protein Machinery gene
  ABQX00_RS15855 (ABQX00_015855) - 3660844..3661707 (+) 864 WP_115511488.1 A24 family peptidase -
  ABQX00_RS15860 (ABQX00_015860) coaE 3661721..3662344 (+) 624 WP_115511489.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 14035.96 Da        Isoelectric Point: 8.4765

>NTDB_id=1043068 ABQX00_RS15840 WP_104567528.1 3657026..3657439(+) (comP) [Xanthomonas arboricola strain WHRI 5708]
MKKNAQGFTLIELMIVIAIIAILAAIALPAYSDYTKKAKVSEVVLAASSGRTTISEYVAANNGNCPSTSVLESQSSTYVS
GVSNSGCVITAVSTVSGATGNIVLTGTVNASTFQVDWTCGGSVQSKYRPGSCQGTKQ

Nucleotide


Download         Length: 414 bp        

>NTDB_id=1043068 ABQX00_RS15840 WP_104567528.1 3657026..3657439(+) (comP) [Xanthomonas arboricola strain WHRI 5708]
ATGAAGAAGAATGCACAGGGCTTCACCCTGATCGAACTGATGATCGTGATCGCCATCATTGCCATCCTGGCCGCCATTGC
GCTGCCGGCCTATTCGGACTACACCAAGAAGGCCAAGGTCTCGGAAGTCGTGCTGGCAGCGTCGTCGGGCCGCACTACCA
TTTCGGAGTATGTCGCTGCGAATAACGGCAACTGCCCCAGCACCAGCGTGCTCGAGAGCCAATCGTCGACCTACGTTAGC
GGTGTCAGCAACAGCGGCTGCGTGATCACCGCAGTCAGCACCGTGTCGGGCGCGACCGGTAATATCGTCCTGACCGGCAC
GGTGAATGCGTCCACCTTCCAGGTCGACTGGACCTGCGGTGGCAGCGTGCAGTCCAAGTACCGTCCGGGTTCCTGCCAGG
GCACTAAGCAGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-28)

Pilin (bacterial filament) (Pilin)

(37-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

44.966

100

0.489
  pilA2 Legionella pneumophila str. Paris

45.324

100

0.46
  pilA2 Legionella pneumophila strain ERS1305867

44.604

100

0.453
  pilE Neisseria gonorrhoeae strain FA1090

36.364

100

0.409
  pilA Ralstonia pseudosolanacearum GMI1000

33.537

100

0.401
  pilA/pilA1 Eikenella corrodens VA1

35.948

100

0.401
  pilA/pilAII Pseudomonas stutzeri DSM 10701

36.242

100

0.394
  pilA Haemophilus influenzae 86-028NP

40

98.54

0.394
  pilA/pilAI Pseudomonas stutzeri DSM 10701

37.241

100

0.394
  pilE Neisseria gonorrhoeae MS11

40.625

93.431

0.38
  pilA Acinetobacter baumannii strain A118

35.915

100

0.372
  pilA Vibrio cholerae C6706

35.461

100

0.365
  pilA Vibrio cholerae strain A1552

35.461

100

0.365
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

35.461

100

0.365

Multiple sequence alignment