Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABQX00_RS15850 Genome accession   NZ_CP168205
Coordinates   3659575..3660837 (+) Length   420 a.a.
NCBI ID   WP_104567539.1    Uniprot ID   -
Organism   Xanthomonas arboricola strain WHRI 5708     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3654575..3665837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQX00_RS15830 (ABQX00_015830) - 3655523..3656320 (-) 798 WP_349783008.1 glycosyltransferase family 2 protein -
  ABQX00_RS15835 (ABQX00_015835) - 3656322..3656702 (-) 381 WP_104567527.1 SMR family transporter -
  ABQX00_RS15840 (ABQX00_015840) comP 3657026..3657439 (+) 414 WP_104567528.1 pilin Machinery gene
  ABQX00_RS15845 (ABQX00_015845) - 3657502..3659463 (+) 1962 WP_349783010.1 hypothetical protein -
  ABQX00_RS15850 (ABQX00_015850) pilC 3659575..3660837 (+) 1263 WP_104567539.1 type II secretion system F family protein Machinery gene
  ABQX00_RS15855 (ABQX00_015855) - 3660844..3661707 (+) 864 WP_115511488.1 A24 family peptidase -
  ABQX00_RS15860 (ABQX00_015860) coaE 3661721..3662344 (+) 624 WP_115511489.1 dephospho-CoA kinase -
  ABQX00_RS15865 (ABQX00_015865) - 3662444..3662599 (+) 156 Protein_3106 SymE family type I addiction module toxin -
  ABQX00_RS15870 (ABQX00_015870) - 3662703..3664037 (-) 1335 WP_016904089.1 HAMP domain-containing sensor histidine kinase -
  ABQX00_RS15875 (ABQX00_015875) - 3664030..3664707 (-) 678 WP_006448355.1 response regulator transcription factor -
  ABQX00_RS15880 (ABQX00_015880) - 3664735..3665213 (-) 479 Protein_3109 hypothetical protein -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45901.40 Da        Isoelectric Point: 10.3728

>NTDB_id=1043069 ABQX00_RS15850 WP_104567539.1 3659575..3660837(+) (pilC) [Xanthomonas arboricola strain WHRI 5708]
MSALGSTVKKGAKPANRINAMTSFIWEGTDKRGVKMKGDELARNANMLRAELRRRGINPTVVKTKPKPLFGATGKPIKPK
DIAFFSRQIATMMKSGVPMVGTLEIIGEGSKNPRMRKMVGEIRTDIEGGSSLNEAISRHPVQFDELYRNLVRAGESAGVL
DTVLDTVATYKENIEALKGKIKKALFYPAMVMAVALIVSSILLIWVVPQFETVFSSFGAELPAFTQMIVNLSRFMVSWWL
PILLVIVGSAVGLTMAYKRSPRMQHLFDRLVLKVPVIGKIMHDSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYE
EAVLRMRDDVSVGYPVNLSMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMIFIGTI
VGGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=1043069 ABQX00_RS15850 WP_104567539.1 3659575..3660837(+) (pilC) [Xanthomonas arboricola strain WHRI 5708]
ATGTCAGCATTGGGCAGCACTGTGAAAAAGGGGGCTAAACCGGCCAATCGTATAAACGCGATGACGTCTTTTATCTGGGA
GGGGACAGACAAGCGCGGCGTCAAAATGAAGGGGGATGAGCTGGCTCGCAATGCAAACATGCTGCGCGCCGAACTCCGCC
GCAGGGGGATCAATCCCACTGTTGTCAAAACAAAGCCCAAGCCGCTGTTTGGCGCAACCGGCAAGCCGATCAAACCTAAG
GACATCGCATTTTTCAGTCGCCAGATTGCGACCATGATGAAATCCGGTGTCCCGATGGTCGGCACCCTGGAAATCATCGG
CGAGGGCTCCAAAAATCCCCGCATGCGAAAGATGGTTGGCGAAATCCGTACCGACATCGAGGGCGGATCATCGCTTAATG
AAGCGATTAGCAGACATCCGGTGCAGTTTGACGAGCTTTATCGCAACCTGGTCCGTGCCGGCGAAAGCGCCGGCGTGCTG
GATACCGTGCTGGATACTGTGGCGACCTATAAGGAAAATATCGAAGCACTGAAGGGCAAGATCAAGAAAGCCCTCTTTTA
TCCAGCAATGGTGATGGCAGTAGCGTTGATCGTCAGTTCCATATTGCTGATTTGGGTGGTACCACAGTTCGAGACAGTAT
TCTCCAGCTTCGGTGCGGAATTACCTGCATTCACCCAAATGATCGTGAATCTTTCACGATTCATGGTTTCCTGGTGGCTC
CCAATCTTGCTGGTGATCGTTGGGTCGGCGGTAGGGCTGACCATGGCCTACAAGCGCTCACCCCGAATGCAACACCTGTT
TGATCGTCTAGTTCTAAAGGTGCCGGTCATTGGCAAGATCATGCACGACAGTTCGATTGCCCGATTCGCACGAACAACCG
CCGTTACCTTCAAGGCAGGCGTTCCGTTGGTCGAAGCGCTGGGAATCGTCGCAGGCGCGACGGGTAACAAGGTCTACGAG
GAAGCAGTCCTGCGGATGCGAGACGACGTATCGGTGGGCTACCCTGTCAATCTGTCGATGAAGCAAGTAAACCTCTTTCC
GCACATGGTGATTCAGATGACTGCGATTGGTGAAGAGGCCGGTGCGCTGGATGCCATGCTGTTCAAGGTCGCTGAATACT
TTGAGCAAGAAGTCAACAATGCCGTCGATGCACTGAGCAGCCTGCTTGAGCCTATGATCATGATCTTCATTGGCACCATC
GTAGGCGGCATGGTCATAGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(289-411)

Type II secretion system (T2SS), protein F (T2SSF)

(85-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.04

94.286

0.51
  pilC Legionella pneumophila strain ERS1305867

51.128

95

0.486
  pilC Acinetobacter baylyi ADP1

50

96.667

0.483
  pilC Acinetobacter baumannii D1279779

48.5

95.238

0.462
  pilG Neisseria meningitidis 44/76-A

43.176

95.952

0.414
  pilG Neisseria gonorrhoeae MS11

42.643

95.476

0.407
  pilC Vibrio cholerae strain A1552

39.75

95.238

0.379
  pilC Vibrio campbellii strain DS40M4

39.25

95.238

0.374
  pilC Thermus thermophilus HB27

38.653

95.476

0.369

Multiple sequence alignment