Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   ABQX00_RS15815 Genome accession   NZ_CP168205
Coordinates   3652056..3653792 (-) Length   578 a.a.
NCBI ID   WP_349783004.1    Uniprot ID   -
Organism   Xanthomonas arboricola strain WHRI 5708     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3647056..3658792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQX00_RS15805 (ABQX00_015805) - 3648393..3650006 (+) 1614 WP_016901263.1 PAS domain-containing sensor histidine kinase -
  ABQX00_RS15810 (ABQX00_015810) pilR 3650199..3651593 (+) 1395 WP_016901261.1 sigma-54 dependent transcriptional regulator Regulator
  ABQX00_RS15815 (ABQX00_015815) pilB 3652056..3653792 (-) 1737 WP_349783004.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABQX00_RS15820 (ABQX00_015820) - 3653885..3654493 (-) 609 WP_349783006.1 methionine biosynthesis protein MetW -
  ABQX00_RS15825 (ABQX00_015825) - 3654486..3655526 (-) 1041 WP_104567525.1 glycosyltransferase -
  ABQX00_RS15830 (ABQX00_015830) - 3655523..3656320 (-) 798 WP_349783008.1 glycosyltransferase family 2 protein -
  ABQX00_RS15835 (ABQX00_015835) - 3656322..3656702 (-) 381 WP_104567527.1 SMR family transporter -
  ABQX00_RS15840 (ABQX00_015840) comP 3657026..3657439 (+) 414 WP_104567528.1 pilin Machinery gene

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 62598.67 Da        Isoelectric Point: 5.7600

>NTDB_id=1043067 ABQX00_RS15815 WP_349783004.1 3652056..3653792(-) (pilB) [Xanthomonas arboricola strain WHRI 5708]
MNTAVTTNLVGITGIARRLVQDGSIDESAARGAMDQAAAAKIPLPQWFAEKKLVSAAQLAAANAVEFGMPLMDVSVFDAN
QNAVKLVSEELLQKHQVLPLFKRGNRLFVGVSNPTQTRALDDIKFHTNLVVEPILVDEDQIRRTLEQWQASNASLGSSLG
DDDEGMGDLDVSAGDEDMGAGGDSGVDAKGDDTPVVKFVNKVLVDAIRRGASDIHFEPYEDDYRVRLRIDGLLKNVAKAP
VKLNQRIAARLKVMSQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKVVLRILDGSAAKLGIEKLGYEADQQK
LFLEAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNNKRGMTFAAALRSFLRQDP
DIIMVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCNNCKRKSTLP
EHALLAEGFTPAQIAAGIELYEAVGCDECTEGYKGRTGIYQVMPMTDEIGAIVLEGGNAMQIAEAAQSIGIRDLRQSALV
KAAHGVTSLAEINRVTKD

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=1043067 ABQX00_RS15815 WP_349783004.1 3652056..3653792(-) (pilB) [Xanthomonas arboricola strain WHRI 5708]
ATGAACACCGCTGTTACGACGAATCTAGTCGGTATCACGGGAATCGCTCGTCGCCTGGTGCAGGACGGTTCGATTGACGA
ATCCGCTGCCCGCGGCGCCATGGACCAGGCTGCGGCCGCCAAGATCCCGCTTCCTCAGTGGTTTGCCGAAAAAAAACTGG
TATCGGCCGCGCAGCTTGCTGCCGCCAACGCCGTTGAGTTCGGGATGCCGCTGATGGACGTGTCGGTCTTCGACGCCAAT
CAGAACGCGGTCAAACTGGTCAGTGAGGAGTTGCTCCAGAAGCACCAGGTGCTGCCGCTGTTCAAGCGCGGCAACCGGTT
GTTCGTGGGGGTGAGCAACCCGACCCAGACCCGGGCGCTGGACGACATCAAGTTCCATACCAACCTGGTGGTCGAGCCGA
TCCTGGTCGACGAGGACCAGATCCGTCGTACCTTGGAGCAGTGGCAGGCCAGCAACGCATCGTTGGGCTCGTCGCTCGGT
GACGACGATGAGGGGATGGGCGATCTGGACGTGTCGGCCGGCGACGAGGACATGGGCGCCGGCGGGGATTCCGGGGTCGA
TGCCAAGGGCGACGACACGCCGGTGGTGAAGTTCGTCAACAAGGTGCTGGTGGATGCGATCCGGCGGGGAGCCTCCGACA
TCCACTTCGAGCCCTATGAAGACGACTATCGGGTGCGCTTGCGGATCGATGGGCTGCTGAAGAATGTGGCCAAGGCACCG
GTGAAGCTGAACCAGCGTATCGCGGCACGCCTGAAGGTGATGTCGCAGCTGGATATCGCCGAGAAGCGGGTGCCGCAGGA
CGGGCGCATCAAGCTCAACCTGTCCAAGACCAAGCAGATCGACTTCCGCGTGAGCACCTTGCCGACATTGTTCGGCGAAA
AGGTAGTGTTGCGTATCCTGGACGGCAGCGCGGCCAAGCTGGGCATCGAGAAGCTGGGCTACGAGGCGGACCAGCAGAAG
CTGTTCCTGGAGGCGATCCACAAGCCCTACGGCATGGTGCTGGTGACCGGGCCGACCGGTTCGGGCAAGACGGTGTCGCT
GTACACTGCACTGGGCATCCTCAACGACGAGACGCGCAACATCTCCACCGCCGAGGACCCGGTGGAAATCCGGTTGCCCG
GCGTCAATCAGGTGCAGCAGAACAACAAGCGCGGCATGACCTTCGCCGCGGCGCTACGCTCGTTTCTGCGCCAGGATCCG
GACATCATCATGGTCGGCGAAATCCGCGACCTGGAGACGGCCGAGATTGCGATCAAAGCCGCGCAGACCGGTCATATGGT
GCTGTCCACGCTGCATACCAACGATGCGCCGCAGACCATCGCGCGTTTGATGAACATGGGCATCGCGCCGTACAACATCA
CCTCGTCGGTGACCCTGGTGATCGCGCAGCGTCTGGCGCGGCGCCTGTGCAACAACTGCAAGCGCAAATCGACCTTGCCC
GAGCATGCGTTGCTGGCGGAAGGCTTCACGCCGGCACAGATCGCTGCCGGTATCGAGTTGTATGAGGCGGTCGGTTGCGA
CGAGTGCACCGAAGGCTACAAGGGCCGTACCGGTATCTACCAGGTGATGCCGATGACCGACGAGATCGGCGCGATCGTGC
TGGAAGGCGGTAACGCGATGCAGATTGCCGAGGCGGCACAGAGTATCGGCATCCGCGACCTGCGCCAGTCGGCGTTGGTC
AAGGCCGCGCACGGGGTGACCAGCTTGGCCGAGATCAACCGGGTGACGAAGGACTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(201-468)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(49-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baumannii D1279779

55.634

98.27

0.547
  pilB Acinetobacter baylyi ADP1

55.282

98.27

0.543
  pilB Legionella pneumophila strain ERS1305867

52.513

99.827

0.524
  pilB Vibrio cholerae strain A1552

48.962

100

0.49
  pilF Neisseria gonorrhoeae MS11

48.944

98.27

0.481
  pilB Vibrio campbellii strain DS40M4

46.046

98.443

0.453
  pilB Vibrio parahaemolyticus RIMD 2210633

46.607

96.886

0.452

Multiple sequence alignment