Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABQX00_RS15810 Genome accession   NZ_CP168205
Coordinates   3650199..3651593 (+) Length   464 a.a.
NCBI ID   WP_016901261.1    Uniprot ID   -
Organism   Xanthomonas arboricola strain WHRI 5708     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3645199..3656593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQX00_RS15795 (ABQX00_015795) sucD 3646092..3646967 (-) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -
  ABQX00_RS15800 (ABQX00_015800) sucC 3646992..3648161 (-) 1170 WP_039519379.1 ADP-forming succinate--CoA ligase subunit beta -
  ABQX00_RS15805 (ABQX00_015805) - 3648393..3650006 (+) 1614 WP_016901263.1 PAS domain-containing sensor histidine kinase -
  ABQX00_RS15810 (ABQX00_015810) pilR 3650199..3651593 (+) 1395 WP_016901261.1 sigma-54 dependent transcriptional regulator Regulator
  ABQX00_RS15815 (ABQX00_015815) pilB 3652056..3653792 (-) 1737 WP_349783004.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABQX00_RS15820 (ABQX00_015820) - 3653885..3654493 (-) 609 WP_349783006.1 methionine biosynthesis protein MetW -
  ABQX00_RS15825 (ABQX00_015825) - 3654486..3655526 (-) 1041 WP_104567525.1 glycosyltransferase -
  ABQX00_RS15830 (ABQX00_015830) - 3655523..3656320 (-) 798 WP_349783008.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50204.60 Da        Isoelectric Point: 6.5112

>NTDB_id=1043066 ABQX00_RS15810 WP_016901261.1 3650199..3651593(+) (pilR) [Xanthomonas arboricola strain WHRI 5708]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKNLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALDQYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAATPGSAA
VEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1043066 ABQX00_RS15810 WP_016901261.1 3650199..3651593(+) (pilR) [Xanthomonas arboricola strain WHRI 5708]
ATGAACGAACCGAAAAGTGCCTTGGTTGTCGATGACGAGCGTGATATTCGCGAACTGCTTGTTCTCACCCTGGGCCGGAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAACAATCCCTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATTGAACTGGTTACCGAAATCGCCAAGCACTATCCGCAGACCCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCCTTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAATAACCGCGACCGTCCTGCCCCGCCACCGCCGC
CACCGGAACAGGCCAGCCGCCTGCTCGGCGATTCCAGTGCGATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCCCGCACCATCCACGAACAGGGCGC
ACGCGCGGCCGGCCCGTTCGTGCCGGTCAACTGTGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCACATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAGGTGGCCGAATTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CTCCAGCGAGTCGCTGGTGGACGTGCGCATTCTCTCGGCCACCCACAAGAACCTGGGCGACCTGGTCTCCGACGGCCGTT
TTCGCCACGACCTGTACTACCGCATCAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCCATCATCGCGCGCCTGGCGCATAGCCACGGCCGGCCGATTCCGCTGCTGACCCAGTCCGCGCTCGA
CGCGCTGGACCAGTACGGCTTCCCGGGCAATGTGCGCGAGCTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCATCGCCTCGCCGCCACCCCCGGCAGCGCCGCC
GTCGAACCCCGCGAAGCGGTGGTCGACATCGACCCCGCCTCGGCCGCCCTGCCCTCCTACATCGAGCAACTGGAGCGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGCTGGGCATCACGTTTCGGGCGT
TGCGTTACAAGTTGAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

48.922

100

0.489

Multiple sequence alignment