Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   ABQ091_RS17940 Genome accession   NZ_CP167993
Coordinates   4171663..4172796 (+) Length   377 a.a.
NCBI ID   WP_005991797.1    Uniprot ID   A0AAJ0IXN2
Organism   Xanthomonas vesicatoria strain WHRI 8302     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4166663..4177796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQ091_RS17915 (ABQ091_017915) - 4166832..4168016 (-) 1185 WP_228862381.1 cystathionine gamma-synthase -
  ABQ091_RS17920 (ABQ091_017920) - 4168107..4169477 (-) 1371 WP_005991806.1 pyridoxal-phosphate dependent enzyme -
  ABQ091_RS17925 (ABQ091_017925) - 4169722..4169940 (-) 219 WP_005991804.1 YdcH family protein -
  ABQ091_RS17930 (ABQ091_017930) - 4170293..4171183 (-) 891 WP_228862382.1 hypothetical protein -
  ABQ091_RS17935 (ABQ091_017935) - 4171180..4171563 (-) 384 WP_039421837.1 DUF4398 domain-containing protein -
  ABQ091_RS17940 (ABQ091_017940) pilU 4171663..4172796 (+) 1134 WP_005991797.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  ABQ091_RS17945 (ABQ091_017945) maiA 4173183..4173845 (-) 663 WP_228862383.1 maleylacetoacetate isomerase -
  ABQ091_RS17950 (ABQ091_017950) - 4173889..4174947 (-) 1059 WP_172797243.1 fumarylacetoacetate hydrolase family protein -
  ABQ091_RS17955 (ABQ091_017955) - 4175254..4176639 (+) 1386 WP_228862384.1 DEAD/DEAH box helicase -
  ABQ091_RS17960 (ABQ091_017960) queD 4176794..4177147 (+) 354 WP_039421851.1 6-carboxytetrahydropterin synthase QueD -
  ABQ091_RS17965 (ABQ091_017965) - 4177339..4177674 (+) 336 WP_039421831.1 phasin family protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 41793.14 Da        Isoelectric Point: 6.1401

>NTDB_id=1040970 ABQ091_RS17940 WP_005991797.1 4171663..4172796(+) (pilU) [Xanthomonas vesicatoria strain WHRI 8302]
MDIGYFLKLMTEKNASDMFLTTGAPVYIKIEGKLYPLGNTGLPPGMVKKIAYSLMDEGQVPQFERELELNMAIALPDAGR
FRVNVFKQRGEVGMVIRAIRSRIPSIEELNLPQVLKDVIMTPRGLVLVVGSTGSGKSTSLASMIDHRNSTTTGHILTIED
PIEYLHKHKMSIVNQREVGLDTHAFQSALKNAMREAPDVILIGEILDAETMEAAIAFAETGHLCLATLHSNNADQTIERI
LNFFPESAHKNVLMNLALNLRAVVSQRLVKGVDGRRRPATEVLLNTPMIRDLLRRGQVHEVKQAMEESLEEGMQTFDQCL
FRMVKTGEIEQEEALRAADSRDGLALKFRLSEGGSGEHDPYADYETAAAPKISHGFI

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=1040970 ABQ091_RS17940 WP_005991797.1 4171663..4172796(+) (pilU) [Xanthomonas vesicatoria strain WHRI 8302]
ATGGATATCGGCTACTTCCTGAAGCTGATGACCGAAAAGAATGCCTCGGACATGTTCTTGACCACCGGCGCGCCGGTGTA
CATCAAGATCGAAGGCAAGCTCTACCCGCTCGGCAATACGGGGTTGCCGCCGGGGATGGTCAAGAAAATCGCTTACTCAC
TGATGGACGAAGGCCAGGTGCCGCAGTTCGAGCGCGAGCTCGAGCTCAACATGGCCATTGCCCTGCCCGACGCCGGACGC
TTCCGCGTGAACGTGTTCAAGCAGCGTGGCGAAGTGGGCATGGTGATCCGCGCCATCCGCAGCCGGATCCCGAGCATCGA
AGAGCTCAACCTGCCGCAGGTGCTCAAGGACGTCATCATGACCCCGCGCGGGCTGGTGCTGGTGGTGGGCTCGACCGGCT
CCGGCAAGTCGACCTCGCTTGCCTCGATGATCGACCACCGCAACAGCACCACCACCGGGCACATCCTCACCATCGAGGAC
CCGATCGAATACCTGCACAAGCACAAGATGTCGATCGTGAACCAGCGCGAGGTGGGCCTGGACACGCACGCCTTCCAGAG
CGCGCTGAAGAACGCGATGCGCGAGGCGCCGGACGTGATCCTGATCGGCGAGATCCTGGATGCCGAGACAATGGAGGCGG
CGATCGCCTTCGCCGAAACCGGTCACCTGTGCCTGGCGACGTTGCACTCCAACAATGCCGACCAGACCATCGAGCGCATC
CTCAACTTCTTCCCGGAAAGCGCGCACAAGAACGTACTGATGAACCTGGCGCTGAATCTGCGCGCCGTGGTCTCGCAGCG
CCTGGTCAAGGGCGTGGATGGGCGCCGCCGTCCCGCCACCGAGGTATTGCTCAACACCCCGATGATCCGCGACCTGCTGC
GCCGCGGTCAGGTGCACGAGGTCAAGCAGGCGATGGAAGAATCGCTGGAGGAAGGCATGCAGACCTTCGACCAATGCCTG
TTCCGGATGGTCAAGACCGGTGAGATCGAGCAGGAGGAAGCGTTGCGTGCGGCCGATTCGCGTGACGGCCTGGCGCTGAA
ATTCCGGCTGTCCGAAGGTGGCTCCGGCGAGCACGATCCTTATGCCGACTACGAGACGGCAGCGGCACCGAAGATCAGTC
ACGGGTTTATCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(81-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

52.368

95.225

0.499
  pilU Vibrio cholerae strain A1552

49.167

95.491

0.469
  pilU Acinetobacter baylyi ADP1

49.435

93.899

0.464
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.241

100

0.448
  pilT Pseudomonas aeruginosa PAK

42.899

89.655

0.385
  pilT Acinetobacter baumannii D1279779

41.42

89.655

0.371
  pilT Acinetobacter nosocomialis M2

41.42

89.655

0.371
  pilT Acinetobacter baumannii strain A118

41.42

89.655

0.371
  pilT Legionella pneumophila strain Lp02

41.42

89.655

0.371
  pilT Legionella pneumophila strain ERS1305867

41.42

89.655

0.371
  pilT Pseudomonas stutzeri DSM 10701

41.617

88.594

0.369
  pilT Acinetobacter baylyi ADP1

40.882

90.186

0.369
  pilT Vibrio cholerae strain A1552

41.141

88.329

0.363
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

41.141

88.329

0.363
  pilT Neisseria gonorrhoeae MS11

39.193

92.042

0.361
  pilT Neisseria meningitidis 8013

39.193

92.042

0.361

Multiple sequence alignment