Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   ACDH63_RS15445 Genome accession   NZ_CP167871
Coordinates   3588466..3588906 (-) Length   146 a.a.
NCBI ID   WP_078590287.1    Uniprot ID   -
Organism   Xanthomonas axonopodis pv. maculifoliigardeniae strain NCPPB 971     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3583466..3593906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDH63_RS15430 (ACDH63_15430) pilR 3584485..3585939 (+) 1455 WP_218488478.1 sigma-54 dependent transcriptional regulator Regulator
  ACDH63_RS15435 (ACDH63_15435) pilB 3586154..3587890 (-) 1737 WP_022558667.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACDH63_RS15440 (ACDH63_15440) - 3587954..3588388 (-) 435 WP_078590286.1 pilin -
  ACDH63_RS15445 (ACDH63_15445) pilE 3588466..3588906 (-) 441 WP_078590287.1 pilin Machinery gene
  ACDH63_RS15450 (ACDH63_15450) pilC 3589233..3590489 (+) 1257 WP_057685777.1 type II secretion system F family protein Machinery gene
  ACDH63_RS15455 (ACDH63_15455) - 3590496..3591359 (+) 864 WP_372353535.1 A24 family peptidase -
  ACDH63_RS15460 (ACDH63_15460) coaE 3591373..3591999 (+) 627 WP_218488476.1 dephospho-CoA kinase -
  ACDH63_RS15465 (ACDH63_15465) - 3592345..3592665 (+) 321 WP_372353536.1 hypothetical protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 14944.04 Da        Isoelectric Point: 9.0090

>NTDB_id=1040063 ACDH63_RS15445 WP_078590287.1 3588466..3588906(-) (pilE) [Xanthomonas axonopodis pv. maculifoliigardeniae strain NCPPB 971]
MKKQNGFTLIELMIVVAIIAILAAIALPAYQDYLARSQVSEGLSLASGAKTAVAETYANTGAFPANNAAAGLEAAANIKG
KYITSVTVSSGGVITALFNNSNAKLSGKNLVLTPTDNNGSISWGCSNGTTIDQKYLPTSCRTAATP

Nucleotide


Download         Length: 441 bp        

>NTDB_id=1040063 ACDH63_RS15445 WP_078590287.1 3588466..3588906(-) (pilE) [Xanthomonas axonopodis pv. maculifoliigardeniae strain NCPPB 971]
ATGAAGAAGCAAAACGGTTTTACTTTGATCGAACTCATGATCGTGGTCGCGATCATTGCGATCCTGGCTGCCATTGCTCT
GCCGGCTTATCAGGACTACCTCGCGCGTTCGCAGGTCTCTGAAGGTCTGTCGCTGGCGTCGGGTGCAAAGACCGCCGTTG
CTGAGACCTATGCCAATACTGGTGCATTCCCGGCCAACAACGCAGCTGCTGGTCTTGAGGCTGCTGCAAACATCAAAGGT
AAGTACATCACCTCGGTGACCGTTAGCTCTGGCGGCGTCATCACTGCGCTGTTTAATAACTCCAATGCAAAGCTGAGTGG
TAAGAACCTTGTCCTGACTCCGACGGACAACAACGGCTCGATCAGCTGGGGTTGCAGCAATGGCACCACCATCGATCAGA
AGTATCTGCCTACCTCTTGCCGTACTGCGGCTACCCCGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

47.799

100

0.521
  pilE Neisseria gonorrhoeae strain FA1090

47.097

100

0.5
  pilA2 Legionella pneumophila str. Paris

50

95.89

0.479
  pilA/pilA1 Eikenella corrodens VA1

45.161

100

0.479
  pilA2 Legionella pneumophila strain ERS1305867

49.286

95.89

0.473
  comP Acinetobacter baylyi ADP1

46

100

0.473
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

36.413

100

0.459
  pilA Acinetobacter baumannii strain A118

42.953

100

0.438
  pilA Ralstonia pseudosolanacearum GMI1000

37.805

100

0.425
  pilA Pseudomonas aeruginosa PAK

39.474

100

0.411
  pilA Vibrio cholerae strain A1552

38.816

100

0.404
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

38.816

100

0.404
  pilA Vibrio cholerae C6706

38.816

100

0.404
  pilA Vibrio campbellii strain DS40M4

38.255

100

0.39
  pilA/pilAI Pseudomonas stutzeri DSM 10701

38.849

95.205

0.37

Multiple sequence alignment