Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACDH63_RS15430 Genome accession   NZ_CP167871
Coordinates   3584485..3585939 (+) Length   484 a.a.
NCBI ID   WP_218488478.1    Uniprot ID   -
Organism   Xanthomonas axonopodis pv. maculifoliigardeniae strain NCPPB 971     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3579485..3590939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDH63_RS15410 (ACDH63_15410) - 3579788..3580132 (-) 345 WP_008577787.1 ribbon-helix-helix domain-containing protein -
  ACDH63_RS15415 (ACDH63_15415) sucD 3580303..3581178 (-) 876 WP_029820064.1 succinate--CoA ligase subunit alpha -
  ACDH63_RS15420 (ACDH63_15420) sucC 3581203..3582372 (-) 1170 WP_007965356.1 ADP-forming succinate--CoA ligase subunit beta -
  ACDH63_RS15425 (ACDH63_15425) - 3582604..3584217 (+) 1614 WP_057681814.1 PAS domain-containing sensor histidine kinase -
  ACDH63_RS15430 (ACDH63_15430) pilR 3584485..3585939 (+) 1455 WP_218488478.1 sigma-54 dependent transcriptional regulator Regulator
  ACDH63_RS15435 (ACDH63_15435) pilB 3586154..3587890 (-) 1737 WP_022558667.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACDH63_RS15440 (ACDH63_15440) - 3587954..3588388 (-) 435 WP_078590286.1 pilin -
  ACDH63_RS15445 (ACDH63_15445) pilE 3588466..3588906 (-) 441 WP_078590287.1 pilin Machinery gene
  ACDH63_RS15450 (ACDH63_15450) pilC 3589233..3590489 (+) 1257 WP_057685777.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52513.32 Da        Isoelectric Point: 7.0128

>NTDB_id=1040061 ACDH63_RS15430 WP_218488478.1 3584485..3585939(+) (pilR) [Xanthomonas axonopodis pv. maculifoliigardeniae strain NCPPB 971]
MGRHLLDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASR
LLGDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAVPNGGAAAEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=1040061 ACDH63_RS15430 WP_218488478.1 3584485..3585939(+) (pilR) [Xanthomonas axonopodis pv. maculifoliigardeniae strain NCPPB 971]
GTGGGCCGCCACCTGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGCTTGCGCATCAGCACCG
CGGCGAACCTGGCCGAGGCGCGCGAGTTGCTGGCCAACAACCCCTACGATCTGTGCCTGACCGACATGCGGTTGCCGGAC
GGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTACCCGCAGACACCGGTGGCGATGATCACCGCCTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAATCGCGACCGTCCCGCTCCGCCACCGCCGCCACCGGAACAGGCCAGCCGC
CTGCTCGGGGACTCCAGTGCCATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGCAGCCAGGCGCCGGTCTACAT
CGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTCGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCG
TGCCGGTCAACTGCGGCGCCATTCCCGCCGAATTGATGGAAAGCGAATTCTTCGGCCACAAGAAGGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTACCGTT
GCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGGTGCGACCGGTCGGCGCATCCAGCGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACCCATAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCTTTCGGCATGACTTGTACTAC
CGCATCAACGTAATCGAGTTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCGCAGCTGGCCGCTGCCATCAT
CGCGCGCCTGGCGCACAGCCATGGCCGCCCCATTCCGCTGCTGACCCAGTCGGCGCTCGACGCATTGAATCACTACGGCT
TCCCAGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCCACC
GACCTGCGCCTGCCCGCTCACGGCGGCCACCGTCTGGCTGTCCCCAACGGAGGTGCCGCGGCCGAGCCGCGCGAAGCCGT
CGTGGACATCGACCCGGCCTCAGCCGCGCTGCCGTCCTACATCGAGCAACTGGAGCGCGCCGCGATCCAGAAGGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACTGCGGCGCAGCTGGGCATCACGTTTCGCGCGCTGCGTTACAAGTTGAAGAAG
CTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Response regulator receiver domain (Response_reg)

(28-134)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

95.661

0.603
  pilR Acinetobacter baumannii strain A118

49.138

95.868

0.471

Multiple sequence alignment