Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   ACCQ05_RS03835 Genome accession   NZ_CP167846
Coordinates   894438..895571 (-) Length   377 a.a.
NCBI ID   WP_372392980.1    Uniprot ID   -
Organism   Xanthomonas sp. NCPPB 3582     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 889438..900571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ05_RS03810 (ACCQ05_03810) - 889627..889962 (-) 336 WP_372392978.1 phasin family protein -
  ACCQ05_RS03815 (ACCQ05_03815) queD 890154..890507 (-) 354 WP_245103354.1 6-carboxytetrahydropterin synthase QueD -
  ACCQ05_RS03820 (ACCQ05_03820) - 890639..892027 (-) 1389 WP_104540804.1 DEAD/DEAH box helicase -
  ACCQ05_RS03825 (ACCQ05_03825) - 892404..893393 (+) 990 WP_324250799.1 fumarylacetoacetate hydrolase family protein -
  ACCQ05_RS03830 (ACCQ05_03830) maiA 893437..894099 (+) 663 WP_372392979.1 maleylacetoacetate isomerase -
  ACCQ05_RS03835 (ACCQ05_03835) pilU 894438..895571 (-) 1134 WP_372392980.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  ACCQ05_RS03840 (ACCQ05_03840) - 895670..896053 (+) 384 WP_372392981.1 DUF4398 domain-containing protein -
  ACCQ05_RS03845 (ACCQ05_03845) - 896050..896940 (+) 891 WP_372392982.1 hypothetical protein -
  ACCQ05_RS03850 (ACCQ05_03850) - 897283..897501 (+) 219 WP_019237985.1 YdcH family protein -
  ACCQ05_RS03855 (ACCQ05_03855) - 897743..899113 (+) 1371 WP_104540811.1 pyridoxal-phosphate dependent enzyme -
  ACCQ05_RS03860 (ACCQ05_03860) - 899203..900390 (+) 1188 WP_372392983.1 cystathionine gamma-synthase -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 41754.12 Da        Isoelectric Point: 6.1401

>NTDB_id=1039789 ACCQ05_RS03835 WP_372392980.1 894438..895571(-) (pilU) [Xanthomonas sp. NCPPB 3582]
MDIGYFLKLMTEKNASDMFLTTGAPVYIKIEGKLYPLGNTGLPPGMVKKIAYSLMDEGQVPQFERELELNMAIALPDAGR
FRVNVFKQRGEVGMVIRAIRSRIPSIEELNLPQVLKDVIMTPRGLVLVVGSTGSGKSTSLASMIDHRNSTTTGHILTIED
PIEYLHKHKMSIVNQREVGLDTHAFQSALKNAMREAPDVILIGEILDAETMEAAIAFAETGHLCLATLHSNNADQTIERI
LNFFPESAHKNVLMNLALNLRAVISQRLVKGMDGRRRPATEVLLNTPMIRDLLRRGQVHEVKAAMEESLEEGMQTFDQCL
FRMVKSGEIEQEEALRAADSRDGLALKFRLSEGGSGEHDPYADYEAASAPKISHGFI

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=1039789 ACCQ05_RS03835 WP_372392980.1 894438..895571(-) (pilU) [Xanthomonas sp. NCPPB 3582]
ATGGATATCGGCTACTTCCTGAAGCTGATGACCGAAAAGAATGCCTCGGACATGTTCTTGACCACCGGCGCGCCGGTGTA
CATCAAGATCGAAGGCAAGCTCTACCCGCTCGGCAATACGGGGTTGCCGCCGGGAATGGTCAAGAAAATCGCTTATTCAT
TGATGGACGAAGGCCAGGTGCCGCAGTTCGAGCGCGAGCTCGAGCTCAACATGGCCATCGCCCTGCCCGACGCCGGCCGC
TTCCGCGTGAACGTGTTCAAACAGCGCGGCGAGGTGGGCATGGTGATCCGTGCCATTCGTAGCCGGATCCCAAGCATCGA
GGAGCTGAACCTGCCGCAGGTGCTCAAGGACGTCATCATGACCCCACGCGGGCTGGTGCTGGTGGTGGGCTCGACCGGCT
CGGGCAAGTCGACCTCGCTGGCCTCGATGATCGACCACCGCAACAGCACCACCACCGGGCACATCCTCACCATCGAGGAC
CCGATCGAATACCTGCACAAGCACAAGATGTCGATCGTGAACCAGCGCGAGGTGGGCCTGGACACGCATGCCTTCCAGAG
CGCGCTGAAGAACGCGATGCGCGAGGCGCCGGACGTGATCCTGATCGGCGAGATCCTGGATGCCGAGACCATGGAGGCCG
CCATCGCCTTCGCCGAGACCGGCCATCTGTGCCTGGCGACGCTGCACTCCAACAACGCCGACCAGACCATCGAGCGCATC
CTCAACTTCTTCCCGGAAAGCGCGCACAAGAACGTACTGATGAACCTGGCGCTCAACCTACGCGCGGTGATCTCCCAGCG
CCTGGTCAAGGGAATGGACGGGCGCCGTCGGCCGGCGACCGAAGTACTGCTCAACACGCCGATGATCCGCGACCTGCTGC
GCCGCGGCCAGGTGCACGAGGTCAAGGCGGCGATGGAAGAGTCGCTGGAAGAGGGCATGCAGACCTTCGACCAGTGCCTG
TTCCGCATGGTCAAGAGCGGCGAGATCGAGCAGGAGGAAGCGCTGCGTGCTGCCGATTCGCGCGACGGGCTGGCGCTGAA
GTTCCGCCTGTCCGAAGGCGGTTCCGGGGAGCACGACCCCTATGCCGACTATGAGGCGGCATCGGCACCGAAGATCAGCC
ACGGGTTTATCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(81-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

52.089

95.225

0.496
  pilU Vibrio cholerae strain A1552

49.722

95.491

0.475
  pilU Acinetobacter baylyi ADP1

49.718

93.899

0.467
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.503

100

0.451
  pilT Pseudomonas aeruginosa PAK

43.195

89.655

0.387
  pilT Acinetobacter baumannii strain A118

41.716

89.655

0.374
  pilT Acinetobacter nosocomialis M2

41.716

89.655

0.374
  pilT Acinetobacter baumannii D1279779

41.716

89.655

0.374
  pilT Acinetobacter baylyi ADP1

41.176

90.186

0.371
  pilT Pseudomonas stutzeri DSM 10701

41.617

88.594

0.369
  pilT Legionella pneumophila strain Lp02

41.124

89.655

0.369
  pilT Legionella pneumophila strain ERS1305867

41.124

89.655

0.369
  pilT Vibrio cholerae strain A1552

41.141

88.329

0.363
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

41.141

88.329

0.363
  pilT Neisseria gonorrhoeae MS11

39.481

92.042

0.363
  pilT Neisseria meningitidis 8013

39.481

92.042

0.363

Multiple sequence alignment