Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   ACCQ23_RS09085 Genome accession   NZ_CP167230
Coordinates   2034857..2035894 (+) Length   345 a.a.
NCBI ID   WP_372178480.1    Uniprot ID   -
Organism   Xanthomonas axonopodis pv. phyllanthi strain NCPPB 2066     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2029857..2040894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ23_RS09055 (ACCQ23_09055) - 2030118..2030660 (-) 543 WP_372178476.1 hypothetical protein -
  ACCQ23_RS09060 (ACCQ23_09060) - 2030717..2031058 (-) 342 WP_372178477.1 DUF3861 domain-containing protein -
  ACCQ23_RS09065 (ACCQ23_09065) - 2031116..2031757 (-) 642 WP_372178478.1 M23 family metallopeptidase -
  ACCQ23_RS09070 (ACCQ23_09070) - 2031863..2032288 (-) 426 WP_008571830.1 HU family DNA-binding protein -
  ACCQ23_RS09075 (ACCQ23_09075) proC 2032848..2033702 (-) 855 WP_033478563.1 pyrroline-5-carboxylate reductase -
  ACCQ23_RS09080 (ACCQ23_09080) - 2033746..2034438 (-) 693 WP_372178479.1 YggS family pyridoxal phosphate-dependent enzyme -
  ACCQ23_RS09085 (ACCQ23_09085) pilT 2034857..2035894 (+) 1038 WP_372178480.1 type IV pilus twitching motility protein PilT Machinery gene
  ACCQ23_RS09090 (ACCQ23_09090) pilU 2036017..2037147 (+) 1131 WP_008571827.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  ACCQ23_RS09095 (ACCQ23_09095) - 2037651..2038325 (+) 675 WP_016851096.1 YitT family protein -
  ACCQ23_RS09100 (ACCQ23_09100) - 2038490..2039416 (-) 927 WP_372178481.1 DUF72 domain-containing protein -
  ACCQ23_RS09105 (ACCQ23_09105) - 2039424..2039996 (-) 573 WP_372178482.1 DNA-3-methyladenine glycosylase I -
  ACCQ23_RS09110 (ACCQ23_09110) - 2040256..2040822 (+) 567 WP_003489930.1 YqgE/AlgH family protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38585.26 Da        Isoelectric Point: 6.8355

>NTDB_id=1039014 ACCQ23_RS09085 WP_372178480.1 2034857..2035894(+) (pilT) [Xanthomonas axonopodis pv. phyllanthi strain NCPPB 2066]
MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDVRRINIPALDHKQVHALVYDIMSDKQRRDYEEFLEVDFSFEIPSLAR
FRVNAFNQNRGAGAVFRTIPSEVLTLEDLGCPPIFRQLIDQPQGLILVTGPTGSGKSTTLAGMIDYINKNEYGHILTVED
PIEFVHTSQKCLINQREVHRDTHGFNEALRSALREDPDIILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAGEKPMVRSMLSESLRAVISQALLKKVGGGRTAAWEIMVGTPAIRNLIREDKVAQMYSSIQTGQQYGMQTLDQHL
QGLVKRSLITRNQAREYAKDKRIFE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1039014 ACCQ23_RS09085 WP_372178480.1 2034857..2035894(+) (pilT) [Xanthomonas axonopodis pv. phyllanthi strain NCPPB 2066]
ATGGATATCGCTGAACTATTGGCGTTTTCTGTCAAGAACAAGGCATCGGACCTGCACCTGTCTGCAGGGCTGCCGCCGAT
GATCCGTGTCGATGGCGATGTTCGTCGCATCAATATTCCGGCGTTGGACCACAAGCAGGTGCACGCGCTGGTGTACGACA
TCATGTCGGACAAGCAGCGGCGCGATTACGAGGAATTTCTCGAGGTCGACTTTTCGTTCGAAATTCCGTCGCTGGCGCGT
TTCCGCGTCAATGCGTTCAACCAGAACCGCGGCGCCGGTGCGGTGTTCCGTACCATTCCGTCCGAAGTGCTGACGCTGGA
AGACCTGGGCTGCCCGCCGATCTTCCGCCAGCTGATCGACCAGCCGCAGGGTTTGATCCTGGTCACTGGCCCGACCGGCT
CGGGCAAGTCGACCACGCTGGCAGGCATGATCGACTACATCAACAAGAATGAGTACGGGCACATCCTCACCGTCGAGGAC
CCGATCGAATTCGTGCACACCTCGCAGAAGTGCCTGATCAACCAGCGCGAAGTGCACCGCGACACCCACGGTTTCAACGA
GGCGCTGCGCTCGGCACTGCGCGAAGACCCGGACATCATCCTGGTCGGTGAACTGCGCGACCTGGAAACCATCCGCCTGG
CGCTGACCGCCGCGGAGACCGGCCACCTGGTGTTCGGCACCCTGCACACCAGTTCGGCGGCCAAGACCATCGACCGCATC
ATCGACGTGTTCCCGGCCGGCGAGAAGCCGATGGTGCGCTCGATGCTGTCCGAATCGTTGCGCGCAGTCATTTCGCAGGC
ACTGCTGAAGAAGGTCGGCGGCGGCCGCACGGCGGCGTGGGAAATCATGGTCGGCACCCCGGCCATCCGCAACCTGATCC
GCGAGGACAAGGTGGCGCAGATGTATTCCTCGATCCAGACCGGCCAGCAATACGGCATGCAGACGCTGGATCAGCATCTG
CAGGGCCTGGTCAAGCGCAGCCTGATCACGCGCAACCAGGCGCGCGAGTACGCCAAGGACAAGCGGATATTCGAGTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

80.233

99.71

0.8
  pilT Acinetobacter baumannii D1279779

80.233

99.71

0.8
  pilT Acinetobacter baumannii strain A118

80.233

99.71

0.8
  pilT Pseudomonas stutzeri DSM 10701

79.651

99.71

0.794
  pilT Acinetobacter baylyi ADP1

78.779

99.71

0.786
  pilT Pseudomonas aeruginosa PAK

79.351

98.261

0.78
  pilT Legionella pneumophila strain Lp02

75.291

99.71

0.751
  pilT Legionella pneumophila strain ERS1305867

75.291

99.71

0.751
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

71.125

95.362

0.678
  pilT Vibrio cholerae strain A1552

71.125

95.362

0.678
  pilT Neisseria meningitidis 8013

65.982

98.841

0.652
  pilT Neisseria gonorrhoeae MS11

65.689

98.841

0.649
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.145

100

0.501
  pilU Pseudomonas stutzeri DSM 10701

40.708

98.261

0.4
  pilU Acinetobacter baylyi ADP1

40

98.551

0.394
  pilU Vibrio cholerae strain A1552

40.597

97.101

0.394

Multiple sequence alignment