Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   AB8808_RS07600 Genome accession   NZ_CP166101
Coordinates   1865101..1866210 (+) Length   369 a.a.
NCBI ID   WP_369930801.1    Uniprot ID   -
Organism   Xanthomonas sp. NCPPB 2632     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1860101..1871210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8808_RS07580 (AB8808_07580) - 1861797..1863167 (-) 1371 WP_369930798.1 pyridoxal-phosphate dependent enzyme -
  AB8808_RS07585 (AB8808_07585) - 1863371..1863598 (-) 228 WP_036139926.1 YdcH family protein -
  AB8808_RS07590 (AB8808_07590) - 1863798..1864448 (-) 651 WP_369930799.1 DUF4398 domain-containing protein -
  AB8808_RS07595 (AB8808_07595) - 1864448..1865005 (-) 558 WP_369930800.1 DUF4398 domain-containing protein -
  AB8808_RS07600 (AB8808_07600) pilU 1865101..1866210 (+) 1110 WP_369930801.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  AB8808_RS07605 (AB8808_07605) maiA 1866339..1866992 (-) 654 WP_369930802.1 maleylacetoacetate isomerase -
  AB8808_RS07610 (AB8808_07610) - 1867106..1868287 (+) 1182 WP_369930804.1 phosphoglycerate kinase -
  AB8808_RS07615 (AB8808_07615) - 1868287..1868937 (+) 651 WP_369930805.1 HAD hydrolase-like protein -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 41163.45 Da        Isoelectric Point: 6.3506

>NTDB_id=1033416 AB8808_RS07600 WP_369930801.1 1865101..1866210(+) (pilU) [Xanthomonas sp. NCPPB 2632]
MDIGYFLKLMVDKGASDMFLTTGAPVNIKVEGKLYPLGNTGLPAGMVKKIAYSLMDEGQVPQFERDLELNMALAVKEAGR
FRINVFKQRGEIGMVIRAIKNEIPSLEELQLPTIFRELIMEPRGLILVVGATGSGKSTTLAAMLDHRNTNCSGHILTIED
PIEYLHRHKRSIVNQREVGLDTHSYHEALKNAMREAPDVIMIGEIRDTETMEAAISFSETGHLCLATLHSNNADQTLERI
LNFFPEAAHKNVLMNLALNLRAVISQRLVTGKDGRRMPATEVLLNTPLIRDMIRRGQIHEVKDAMDRSLQEGMQTFDQSL
YRLYKDDKITLEECLNKADSRDGLALKIRLSEGATGNEFASSDPYGIGV

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=1033416 AB8808_RS07600 WP_369930801.1 1865101..1866210(+) (pilU) [Xanthomonas sp. NCPPB 2632]
GTGGATATCGGTTATTTCCTGAAGCTGATGGTGGACAAGGGCGCGTCGGATATGTTCCTGACGACGGGTGCTCCGGTGAA
CATCAAGGTGGAAGGCAAGCTCTACCCGTTGGGCAACACCGGCCTGCCTGCCGGCATGGTGAAGAAGATCGCCTACTCGC
TGATGGACGAGGGCCAGGTGCCCCAGTTCGAGCGCGACCTGGAACTGAACATGGCCCTGGCCGTGAAGGAAGCCGGGCGT
TTCCGCATCAACGTGTTCAAGCAGCGTGGCGAGATCGGCATGGTCATCCGTGCCATCAAGAACGAGATCCCCTCGCTGGA
AGAACTGCAGCTACCCACCATCTTCCGTGAACTGATCATGGAGCCGCGCGGCCTCATCCTGGTCGTGGGCGCCACCGGCT
CGGGCAAGTCCACCACCCTGGCCGCCATGCTCGACCACCGCAACACCAACTGCTCGGGCCATATCCTCACCATCGAGGAC
CCGATCGAATACCTGCACCGGCACAAGCGCTCCATCGTCAACCAGCGCGAGGTGGGCCTCGATACCCATAGCTACCACGA
GGCCCTGAAGAACGCGATGCGCGAGGCGCCGGACGTCATCATGATCGGCGAGATCCGCGATACCGAGACCATGGAGGCGG
CCATCTCGTTCTCCGAGACCGGTCATCTCTGCCTCGCCACGCTGCATTCGAACAACGCCGACCAGACCCTGGAGCGCATC
CTCAACTTCTTCCCGGAAGCCGCGCACAAGAACGTCCTGATGAACCTGGCCCTGAACCTGCGAGCCGTGATCAGCCAGCG
CCTGGTGACCGGCAAGGACGGCCGCCGCATGCCCGCCACCGAGGTACTGCTCAATACCCCGCTGATCCGCGACATGATCC
GCCGCGGCCAGATCCACGAGGTGAAGGACGCCATGGACCGCAGCCTGCAGGAAGGCATGCAGACCTTCGACCAGTCGCTA
TATCGTCTGTACAAGGACGACAAGATCACGCTCGAGGAATGCCTGAACAAGGCGGACTCGCGAGATGGCCTGGCATTGAA
GATCCGCCTGTCCGAGGGAGCGACCGGGAACGAGTTCGCTTCCAGCGATCCGTATGGGATTGGGGTTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(39-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Vibrio cholerae strain A1552

50.136

100

0.501
  pilU Pseudomonas stutzeri DSM 10701

50.552

98.103

0.496
  pilU Acinetobacter baylyi ADP1

49.719

96.477

0.48
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.443

99.187

0.431
  pilT Legionella pneumophila strain ERS1305867

40.936

92.683

0.379
  pilT Legionella pneumophila strain Lp02

40.936

92.683

0.379
  pilT Acinetobacter baylyi ADP1

42.296

89.702

0.379
  pilT Pseudomonas aeruginosa PAK

41.124

91.599

0.377
  pilT Pseudomonas stutzeri DSM 10701

40.533

91.599

0.371
  pilT Acinetobacter nosocomialis M2

42.188

86.721

0.366
  pilT Acinetobacter baumannii strain A118

42.188

86.721

0.366
  pilT Acinetobacter baumannii D1279779

42.188

86.721

0.366
  pilT Neisseria meningitidis 8013

38.329

94.038

0.36
  pilT Neisseria gonorrhoeae MS11

38.329

94.038

0.36
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

39.466

91.328

0.36
  pilT Vibrio cholerae strain A1552

39.466

91.328

0.36

Multiple sequence alignment