Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | AB8809_RS04260 | Genome accession | NZ_CP166097 |
| Coordinates | 943378..944394 (+) | Length | 338 a.a. |
| NCBI ID | WP_349854492.1 | Uniprot ID | - |
| Organism | Pectobacterium aroidearum strain NCPPB 929 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 938378..949394
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB8809_RS04225 (AB8809_04225) | - | 938606..938866 (-) | 261 | WP_015841595.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| AB8809_RS04230 (AB8809_04230) | hemW | 939095..940237 (-) | 1143 | WP_349854496.1 | radical SAM family heme chaperone HemW | - |
| AB8809_RS04235 (AB8809_04235) | - | 940230..940823 (-) | 594 | WP_349854494.1 | XTP/dITP diphosphatase | - |
| AB8809_RS04240 (AB8809_04240) | yggU | 940841..941131 (-) | 291 | WP_010279110.1 | DUF167 family protein YggU | - |
| AB8809_RS04245 (AB8809_04245) | - | 941128..941682 (-) | 555 | WP_010295003.1 | YggT family protein | - |
| AB8809_RS04250 (AB8809_04250) | proC | 941731..942552 (-) | 822 | WP_015841592.1 | pyrroline-5-carboxylate reductase | - |
| AB8809_RS04255 (AB8809_04255) | - | 942643..943356 (-) | 714 | WP_349854493.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| AB8809_RS04260 (AB8809_04260) | pilT | 943378..944394 (+) | 1017 | WP_349854492.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| AB8809_RS04265 (AB8809_04265) | - | 944363..944743 (-) | 381 | WP_369987562.1 | GGDEF domain-containing protein | - |
| AB8809_RS04270 (AB8809_04270) | - | 944768..946189 (-) | 1422 | WP_349854491.1 | PAS domain S-box protein | - |
| AB8809_RS04275 (AB8809_04275) | - | 946719..948290 (-) | 1572 | WP_181848552.1 | methyl-accepting chemotaxis protein | - |
| AB8809_RS04280 (AB8809_04280) | nsrR | 948607..949032 (+) | 426 | WP_015841587.1 | nitric oxide-sensing transcriptional repressor NsrR | - |
Sequence
Protein
Download Length: 338 a.a. Molecular weight: 36805.13 Da Isoelectric Point: 6.8715
>NTDB_id=1033373 AB8809_RS04260 WP_349854492.1 943378..944394(+) (pilT) [Pectobacterium aroidearum strain NCPPB 929]
MELDEWIARSVKHNASDLHLCSGHPPVLRVDGRLQPENTLPRLTSGQVAQWCDAWLEPAQREQLRQFGQIDGALMLPDGQ
RLRVNVFRQREGLSAALRIIPSVQPSLDGLHAPPVLSTLLEKPNGLILITGATGSGKSTTLAAMLGALNDSSDRHVITLE
DPIEFIHASRRCLIQQREIGAHSASFAQALRATLREDPDVILLGELRDTETIRLALTAAETGHLVLSTLHTRSASQAVDR
LIDVFPGEEKAYVRSQLATCLQAVVTQRLLPSALGGRIALYEVLTATAAVSNLIREGKMHQLPGLIQTGTAAGMQTFEQS
YQQRCRDGLISHNCALAV
MELDEWIARSVKHNASDLHLCSGHPPVLRVDGRLQPENTLPRLTSGQVAQWCDAWLEPAQREQLRQFGQIDGALMLPDGQ
RLRVNVFRQREGLSAALRIIPSVQPSLDGLHAPPVLSTLLEKPNGLILITGATGSGKSTTLAAMLGALNDSSDRHVITLE
DPIEFIHASRRCLIQQREIGAHSASFAQALRATLREDPDVILLGELRDTETIRLALTAAETGHLVLSTLHTRSASQAVDR
LIDVFPGEEKAYVRSQLATCLQAVVTQRLLPSALGGRIALYEVLTATAAVSNLIREGKMHQLPGLIQTGTAAGMQTFEQS
YQQRCRDGLISHNCALAV
Nucleotide
Download Length: 1017 bp
>NTDB_id=1033373 AB8809_RS04260 WP_349854492.1 943378..944394(+) (pilT) [Pectobacterium aroidearum strain NCPPB 929]
ATGGAATTGGATGAGTGGATAGCGCGTAGTGTAAAACATAATGCCTCAGATCTGCACCTTTGTAGCGGCCACCCGCCAGT
GTTACGTGTCGATGGGCGGCTACAGCCTGAAAATACCTTACCACGTTTAACGTCAGGGCAGGTGGCACAATGGTGCGATG
CCTGGCTTGAACCCGCTCAGAGAGAACAACTGCGGCAGTTTGGTCAGATAGACGGCGCGTTAATGCTGCCTGATGGGCAG
CGTCTGCGGGTAAATGTGTTTCGTCAGCGAGAAGGGCTGTCCGCGGCGCTGCGTATTATCCCGTCCGTTCAGCCGTCATT
GGACGGGCTACACGCGCCACCCGTTCTGTCGACGCTGCTGGAGAAACCGAACGGGCTGATCCTGATTACCGGAGCGACGG
GGAGCGGTAAATCCACGACGCTGGCGGCAATGCTCGGGGCGTTAAACGACAGCAGCGATCGCCATGTGATTACGCTGGAG
GATCCGATCGAGTTTATCCATGCCAGCCGACGCTGCCTGATTCAACAGCGTGAGATCGGTGCGCACAGCGCGTCTTTTGC
ACAGGCGCTACGGGCTACCTTGCGGGAAGATCCCGATGTGATTCTGCTGGGAGAATTGCGCGATACGGAGACGATTCGGC
TGGCGCTGACGGCGGCGGAAACCGGTCATCTCGTGCTATCCACACTGCATACGCGCAGTGCATCGCAGGCGGTCGATCGT
CTGATTGATGTCTTTCCCGGTGAAGAGAAAGCCTATGTTCGCAGTCAGCTAGCCACCTGTTTGCAGGCCGTGGTGACGCA
AAGGTTGTTGCCTTCTGCACTCGGCGGTCGCATTGCGCTTTATGAAGTGCTGACGGCGACAGCGGCAGTCAGCAACCTGA
TTCGGGAAGGGAAAATGCATCAGCTTCCCGGCCTGATTCAAACGGGAACGGCTGCGGGCATGCAAACGTTCGAGCAAAGC
TACCAGCAGCGCTGTCGGGATGGGCTTATTTCACACAATTGCGCCCTTGCCGTTTAG
ATGGAATTGGATGAGTGGATAGCGCGTAGTGTAAAACATAATGCCTCAGATCTGCACCTTTGTAGCGGCCACCCGCCAGT
GTTACGTGTCGATGGGCGGCTACAGCCTGAAAATACCTTACCACGTTTAACGTCAGGGCAGGTGGCACAATGGTGCGATG
CCTGGCTTGAACCCGCTCAGAGAGAACAACTGCGGCAGTTTGGTCAGATAGACGGCGCGTTAATGCTGCCTGATGGGCAG
CGTCTGCGGGTAAATGTGTTTCGTCAGCGAGAAGGGCTGTCCGCGGCGCTGCGTATTATCCCGTCCGTTCAGCCGTCATT
GGACGGGCTACACGCGCCACCCGTTCTGTCGACGCTGCTGGAGAAACCGAACGGGCTGATCCTGATTACCGGAGCGACGG
GGAGCGGTAAATCCACGACGCTGGCGGCAATGCTCGGGGCGTTAAACGACAGCAGCGATCGCCATGTGATTACGCTGGAG
GATCCGATCGAGTTTATCCATGCCAGCCGACGCTGCCTGATTCAACAGCGTGAGATCGGTGCGCACAGCGCGTCTTTTGC
ACAGGCGCTACGGGCTACCTTGCGGGAAGATCCCGATGTGATTCTGCTGGGAGAATTGCGCGATACGGAGACGATTCGGC
TGGCGCTGACGGCGGCGGAAACCGGTCATCTCGTGCTATCCACACTGCATACGCGCAGTGCATCGCAGGCGGTCGATCGT
CTGATTGATGTCTTTCCCGGTGAAGAGAAAGCCTATGTTCGCAGTCAGCTAGCCACCTGTTTGCAGGCCGTGGTGACGCA
AAGGTTGTTGCCTTCTGCACTCGGCGGTCGCATTGCGCTTTATGAAGTGCTGACGGCGACAGCGGCAGTCAGCAACCTGA
TTCGGGAAGGGAAAATGCATCAGCTTCCCGGCCTGATTCAAACGGGAACGGCTGCGGGCATGCAAACGTTCGAGCAAAGC
TACCAGCAGCGCTGTCGGGATGGGCTTATTTCACACAATTGCGCCCTTGCCGTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.