Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | AB3489_RS09335 | Genome accession | NZ_CP162385 |
| Coordinates | 1894582..1895658 (+) | Length | 358 a.a. |
| NCBI ID | WP_368292666.1 | Uniprot ID | - |
| Organism | Dehalobacter sp. TBBPA1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1889582..1900658
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB3489_RS09325 (AB3489_09325) | - | 1892294..1892959 (-) | 666 | WP_019226761.1 | A24 family peptidase | - |
| AB3489_RS09330 (AB3489_09330) | - | 1893107..1894547 (+) | 1441 | Protein_1825 | GspE/PulE family protein | - |
| AB3489_RS09335 (AB3489_09335) | pilT | 1894582..1895658 (+) | 1077 | WP_368292666.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| AB3489_RS09340 (AB3489_09340) | - | 1895890..1896129 (-) | 240 | WP_368292667.1 | hypothetical protein | - |
| AB3489_RS09415 (AB3489_09415) | - | 1897766..1899430 (-) | 1665 | WP_019226756.1 | ribonuclease J | - |
Sequence
Protein
Download Length: 358 a.a. Molecular weight: 39673.07 Da Isoelectric Point: 6.3404
>NTDB_id=1024991 AB3489_RS09335 WP_368292666.1 1894582..1895658(+) (pilT) [Dehalobacter sp. TBBPA1]
MNLNIRDLLLMSLELKASDLHITTGLPPMFRINGILTPMANAKYLSPLDTKELVDELMDEPVKNRLQQKGEVDFSYTIPG
ISRFRVNVYSQRKSLAAAIRVIVPDIPSINELGLPDILKDLAMKPRGLILVTGPTGSGKSTTLAAMVCHMNTHRNSHVIT
IEDPIEYLHAHNQCMINQRDIGDDTHTFADALRSALREDPDVILVGEMRDLETINTALMASETGHLVLSTLHTSSAATTI
DRIIDVFPPNQLQQIKVQLASVLQGIICQQLLPTMDGTGRVAAMEALIVNDAVRNMIREGKTHQIDTVIQTGIKAGMAPM
DYSLANLVKRKMVTLEEAKSRCVNPELFSKYLDQPYIF
MNLNIRDLLLMSLELKASDLHITTGLPPMFRINGILTPMANAKYLSPLDTKELVDELMDEPVKNRLQQKGEVDFSYTIPG
ISRFRVNVYSQRKSLAAAIRVIVPDIPSINELGLPDILKDLAMKPRGLILVTGPTGSGKSTTLAAMVCHMNTHRNSHVIT
IEDPIEYLHAHNQCMINQRDIGDDTHTFADALRSALREDPDVILVGEMRDLETINTALMASETGHLVLSTLHTSSAATTI
DRIIDVFPPNQLQQIKVQLASVLQGIICQQLLPTMDGTGRVAAMEALIVNDAVRNMIREGKTHQIDTVIQTGIKAGMAPM
DYSLANLVKRKMVTLEEAKSRCVNPELFSKYLDQPYIF
Nucleotide
Download Length: 1077 bp
>NTDB_id=1024991 AB3489_RS09335 WP_368292666.1 1894582..1895658(+) (pilT) [Dehalobacter sp. TBBPA1]
ATGAATCTAAATATCAGGGACTTACTTTTAATGTCATTGGAACTGAAAGCTTCTGACCTCCACATCACAACCGGTCTTCC
CCCAATGTTCAGAATCAATGGTATCTTGACTCCGATGGCAAACGCCAAGTATTTGTCTCCGTTGGACACCAAAGAGCTTG
TTGATGAACTGATGGATGAACCCGTGAAAAACCGTTTGCAGCAAAAGGGAGAAGTCGACTTTTCCTATACGATCCCTGGT
ATCAGCCGTTTCAGGGTTAACGTCTACAGCCAGCGAAAAAGCCTGGCGGCCGCGATCAGGGTCATTGTTCCGGATATTCC
AAGCATTAACGAGCTGGGACTGCCAGATATCCTGAAAGACCTCGCAATGAAACCCAGAGGTCTGATCCTGGTCACGGGTC
CGACCGGTTCCGGTAAATCCACTACCCTTGCTGCCATGGTGTGCCATATGAATACGCACCGCAACAGTCACGTCATTACC
ATCGAAGACCCGATCGAATATTTGCATGCCCATAATCAATGTATGATAAACCAGCGTGATATTGGCGACGATACCCATAC
CTTTGCAGATGCTTTACGGTCTGCACTGCGTGAAGACCCCGATGTTATCCTGGTCGGTGAAATGCGCGACCTTGAGACGA
TCAACACGGCCTTGATGGCTTCAGAAACAGGCCACCTGGTCTTGTCCACCCTCCATACTTCATCCGCAGCGACTACCATT
GACCGGATTATCGATGTCTTTCCGCCGAATCAGCTGCAGCAAATTAAAGTTCAGTTGGCATCTGTTCTTCAGGGCATTAT
CTGCCAGCAGCTGCTGCCTACTATGGATGGTACTGGACGTGTTGCAGCGATGGAAGCTCTCATCGTCAATGACGCTGTCC
GGAATATGATTCGCGAAGGCAAGACCCACCAGATTGATACGGTCATCCAGACTGGCATCAAAGCGGGTATGGCCCCGATG
GATTATTCTCTGGCGAATCTGGTTAAGCGGAAGATGGTAACCCTTGAGGAAGCAAAATCGAGATGCGTGAATCCAGAACT
GTTCTCGAAGTATCTTGATCAGCCGTATATTTTCTAA
ATGAATCTAAATATCAGGGACTTACTTTTAATGTCATTGGAACTGAAAGCTTCTGACCTCCACATCACAACCGGTCTTCC
CCCAATGTTCAGAATCAATGGTATCTTGACTCCGATGGCAAACGCCAAGTATTTGTCTCCGTTGGACACCAAAGAGCTTG
TTGATGAACTGATGGATGAACCCGTGAAAAACCGTTTGCAGCAAAAGGGAGAAGTCGACTTTTCCTATACGATCCCTGGT
ATCAGCCGTTTCAGGGTTAACGTCTACAGCCAGCGAAAAAGCCTGGCGGCCGCGATCAGGGTCATTGTTCCGGATATTCC
AAGCATTAACGAGCTGGGACTGCCAGATATCCTGAAAGACCTCGCAATGAAACCCAGAGGTCTGATCCTGGTCACGGGTC
CGACCGGTTCCGGTAAATCCACTACCCTTGCTGCCATGGTGTGCCATATGAATACGCACCGCAACAGTCACGTCATTACC
ATCGAAGACCCGATCGAATATTTGCATGCCCATAATCAATGTATGATAAACCAGCGTGATATTGGCGACGATACCCATAC
CTTTGCAGATGCTTTACGGTCTGCACTGCGTGAAGACCCCGATGTTATCCTGGTCGGTGAAATGCGCGACCTTGAGACGA
TCAACACGGCCTTGATGGCTTCAGAAACAGGCCACCTGGTCTTGTCCACCCTCCATACTTCATCCGCAGCGACTACCATT
GACCGGATTATCGATGTCTTTCCGCCGAATCAGCTGCAGCAAATTAAAGTTCAGTTGGCATCTGTTCTTCAGGGCATTAT
CTGCCAGCAGCTGCTGCCTACTATGGATGGTACTGGACGTGTTGCAGCGATGGAAGCTCTCATCGTCAATGACGCTGTCC
GGAATATGATTCGCGAAGGCAAGACCCACCAGATTGATACGGTCATCCAGACTGGCATCAAAGCGGGTATGGCCCCGATG
GATTATTCTCTGGCGAATCTGGTTAAGCGGAAGATGGTAACCCTTGAGGAAGCAAAATCGAGATGCGTGAATCCAGAACT
GTTCTCGAAGTATCTTGATCAGCCGTATATTTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
49.148 |
98.324 |
0.483 |
| pilT | Neisseria meningitidis 8013 |
48.991 |
96.927 |
0.475 |
| pilT | Neisseria gonorrhoeae MS11 |
48.703 |
96.927 |
0.472 |
| pilT | Acinetobacter baumannii strain A118 |
48.555 |
96.648 |
0.469 |
| pilT | Acinetobacter baylyi ADP1 |
48.555 |
96.648 |
0.469 |
| pilT | Acinetobacter baumannii D1279779 |
48.555 |
96.648 |
0.469 |
| pilT | Acinetobacter nosocomialis M2 |
48.555 |
96.648 |
0.469 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
48.673 |
94.693 |
0.461 |
| pilT | Vibrio cholerae strain A1552 |
48.673 |
94.693 |
0.461 |
| pilT | Pseudomonas aeruginosa PAK |
46.705 |
97.486 |
0.455 |
| pilT | Legionella pneumophila strain Lp02 |
46.418 |
97.486 |
0.453 |
| pilT | Legionella pneumophila strain ERS1305867 |
46.418 |
97.486 |
0.453 |
| pilT | Pseudomonas stutzeri DSM 10701 |
45.845 |
97.486 |
0.447 |
| pilU | Pseudomonas stutzeri DSM 10701 |
41.369 |
93.855 |
0.388 |
| pilU | Acinetobacter baylyi ADP1 |
40.116 |
96.089 |
0.385 |
| pilB/pilB1 | Synechocystis sp. PCC 6803 |
28.634 |
100 |
0.363 |