Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   AB3N39_RS17360 Genome accession   NZ_CP162152
Coordinates   3715589..3716569 (-) Length   326 a.a.
NCBI ID   WP_111963224.1    Uniprot ID   -
Organism   Enterobacter vonholyi strain STK80-C     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3710589..3721569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3N39_RS17330 (AB3N39_17330) - 3711466..3711963 (+) 498 WP_021242073.1 SprT family zinc-dependent metalloprotease -
  AB3N39_RS17335 (AB3N39_17335) endA 3712058..3712765 (+) 708 WP_115876242.1 deoxyribonuclease I -
  AB3N39_RS17340 (AB3N39_17340) rsmE 3712817..3713548 (+) 732 WP_136195093.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  AB3N39_RS17345 (AB3N39_17345) gshB 3713568..3714515 (+) 948 WP_047173570.1 glutathione synthase -
  AB3N39_RS17350 (AB3N39_17350) - 3714603..3715163 (+) 561 WP_020883695.1 YqgE/AlgH family protein -
  AB3N39_RS17355 (AB3N39_17355) ruvX 3715163..3715579 (+) 417 WP_021242076.1 Holliday junction resolvase RuvX -
  AB3N39_RS17360 (AB3N39_17360) pilT 3715589..3716569 (-) 981 WP_111963224.1 type IV pilus twitching motility protein PilT Machinery gene
  AB3N39_RS17365 (AB3N39_17365) - 3716587..3717288 (+) 702 WP_115876245.1 YggS family pyridoxal phosphate-dependent enzyme -
  AB3N39_RS17370 (AB3N39_17370) - 3717310..3717876 (+) 567 WP_111963226.1 YggT family protein -
  AB3N39_RS17375 (AB3N39_17375) yggU 3717873..3718169 (+) 297 WP_023309131.1 DUF167 family protein YggU -
  AB3N39_RS17380 (AB3N39_17380) - 3718173..3718766 (+) 594 WP_136195092.1 XTP/dITP diphosphatase -
  AB3N39_RS17385 (AB3N39_17385) hemW 3718759..3719901 (+) 1143 WP_136195091.1 radical SAM family heme chaperone HemW -
  AB3N39_RS17390 (AB3N39_17390) - 3720075..3720791 (-) 717 WP_008499762.1 DUF2884 domain-containing protein -
  AB3N39_RS17395 (AB3N39_17395) - 3720848..3721174 (-) 327 WP_003862421.1 YggL family protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35524.48 Da        Isoelectric Point: 6.4990

>NTDB_id=1024303 AB3N39_RS17360 WP_111963224.1 3715589..3716569(-) (pilT) [Enterobacter vonholyi strain STK80-C]
MDVEEIVALSVKHNVSDLHLCSDSPPRWRRTGRLEPAPFPPPDVGALLKAWLNDEQQGTWWANGQVDFAATVTGGQRLRG
SAFKQMRGVSVTLRLLPRTCPQLATLGAPRAIPELLSNDAGLILVTGATGSGKSTTLAAMVDFLNHHTDGHILTLEDPVE
FIYQSERCLIQQREIGQHSPSFADALRSALRQDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGASQAIERLVDT
FPAQEKDPVRNQLAGSLRAVLAQKLLPDLQDGRVALYELLVNTAAAANLIREGKTWQLPGIIQTGLQAGMQNFDQSLAER
RAQGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=1024303 AB3N39_RS17360 WP_111963224.1 3715589..3716569(-) (pilT) [Enterobacter vonholyi strain STK80-C]
ATGGATGTGGAAGAAATTGTGGCCCTTAGTGTAAAGCATAACGTCTCCGATCTACACCTGTGCAGTGATTCGCCACCCCG
CTGGCGCAGAACGGGCCGCCTTGAACCGGCACCGTTTCCTCCTCCTGACGTCGGGGCGTTGTTAAAAGCGTGGCTCAACG
ATGAGCAGCAGGGAACATGGTGGGCAAATGGACAGGTGGATTTTGCCGCGACGGTAACGGGAGGCCAGCGTCTGCGCGGG
AGTGCCTTTAAGCAGATGCGCGGTGTCTCTGTGACGCTGCGGCTGTTGCCGCGTACCTGTCCGCAGCTCGCTACGCTGGG
CGCGCCGCGGGCAATCCCGGAACTGTTATCCAATGACGCCGGGCTGATTCTGGTCACGGGGGCGACCGGCAGCGGCAAAT
CTACGACGCTGGCGGCGATGGTCGATTTTCTCAACCACCATACTGACGGCCATATCCTCACGCTTGAAGATCCGGTGGAG
TTTATCTACCAGAGCGAGCGTTGCCTGATCCAGCAGCGGGAGATTGGCCAGCATAGTCCGTCATTTGCCGACGCGCTGCG
CAGCGCCTTACGCCAGGATCCGGACGTTATTTTGCTGGGGGAGCTGCGCGACAGCGAAACGATCCGCCTGGCGCTAACGG
CGGCGGAAACCGGACATCTGGTGCTGGCGACGCTGCATACGCGCGGGGCATCGCAGGCGATTGAACGGCTGGTCGATACG
TTCCCGGCGCAGGAGAAAGATCCGGTGCGTAACCAGCTGGCCGGCAGCCTCCGGGCAGTGCTGGCGCAGAAGCTGCTTCC
CGATCTGCAGGACGGCCGCGTCGCGCTGTATGAACTGCTGGTGAACACCGCTGCGGCGGCAAACCTTATTCGTGAAGGGA
AAACGTGGCAACTGCCCGGCATCATCCAAACCGGTCTGCAGGCAGGAATGCAGAACTTTGACCAGAGCCTGGCGGAGAGA
CGGGCGCAGGGGCGGCTGTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(74-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

50.153

100

0.503
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

50.153

100

0.503
  pilT Legionella pneumophila strain Lp02

48.758

98.773

0.482
  pilT Legionella pneumophila strain ERS1305867

48.758

98.773

0.482
  pilT Pseudomonas stutzeri DSM 10701

48.012

100

0.482
  pilT Neisseria meningitidis 8013

47.561

100

0.479
  pilT Acinetobacter baumannii strain A118

47.401

100

0.475
  pilT Acinetobacter baylyi ADP1

47.401

100

0.475
  pilT Acinetobacter baumannii D1279779

47.401

100

0.475
  pilT Neisseria gonorrhoeae MS11

47.256

100

0.475
  pilT Pseudomonas aeruginosa PAK

47.095

100

0.472
  pilT Acinetobacter nosocomialis M2

47.812

98.16

0.469
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.789

98.773

0.433
  pilU Pseudomonas stutzeri DSM 10701

39.394

100

0.399
  pilU Vibrio cholerae strain A1552

38.82

98.773

0.383
  pilU Acinetobacter baylyi ADP1

36.842

99.08

0.365

Multiple sequence alignment