Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   ABZS47_RS08830 Genome accession   NZ_CP160099
Coordinates   1871827..1872876 (+) Length   349 a.a.
NCBI ID   WP_412471344.1    Uniprot ID   -
Organism   Moraxella catarrhalis strain A_01_mct     
Function   mediate the depolymerization of the type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1866827..1877876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZS47_RS08805 (ABZS47_08810) - 1867755..1868114 (+) 360 WP_003657821.1 hypothetical protein -
  ABZS47_RS08810 (ABZS47_08815) - 1868150..1868497 (+) 348 WP_003657819.1 cell division protein ZapA -
  ABZS47_RS08815 (ABZS47_08820) - 1868559..1868834 (-) 276 WP_003657817.1 hypothetical protein -
  ABZS47_RS08820 (ABZS47_08825) - 1869083..1870774 (+) 1692 WP_003663201.1 NAD+ synthase -
  ABZS47_RS08825 (ABZS47_08830) - 1870828..1871538 (-) 711 WP_152721050.1 YggS family pyridoxal phosphate-dependent enzyme -
  ABZS47_RS08830 (ABZS47_08835) pilT 1871827..1872876 (+) 1050 WP_412471344.1 type IV pilus twitching motility protein PilT Machinery gene
  ABZS47_RS08835 (ABZS47_08840) fur 1873055..1873495 (-) 441 WP_003657811.1 ferric iron uptake transcriptional regulator -
  ABZS47_RS08840 (ABZS47_08845) - 1873729..1874097 (+) 369 WP_003657805.1 outer membrane protein assembly factor BamE -
  ABZS47_RS08845 (ABZS47_08850) - 1874161..1874793 (-) 633 WP_036335134.1 DedA family protein -
  ABZS47_RS08850 (ABZS47_08855) - 1875066..1875953 (+) 888 WP_003662705.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 38817.72 Da        Isoelectric Point: 6.8269

>NTDB_id=1018015 ABZS47_RS08830 WP_412471344.1 1871827..1872876(+) (pilT) [Moraxella catarrhalis strain A_01_mct]
MNTPDLMGLLRFAHQKNASDLHLSAQQPIMLRIDGNLLPMDITPIDTDGIMQMLRLVMDDTDYHQWQHNLEHDFVLSLDG
IARFRVNVFFQAHGAAAVFRVIKTHIPSIQQLSYDEYIYDSMLKIAKLQAGLVLITGATGSGKSTTLASFIDHINQHQKK
HIITIEDPIEYEHSSKLSLINQRQVGKDTRSFQNALRSALREDPDVILVGELRDLETIRLALTAAETGHLVLATLHTVNA
PKSIDRIIEVFDAGEKHMIRTMLADSLKAVVAQRLLPAQGGGRVAAFEILTHTPAVAHLIRENKISQLPSVIQTSLTQGM
IDLTQSLSRLAETGKITPATANEQINMLR

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=1018015 ABZS47_RS08830 WP_412471344.1 1871827..1872876(+) (pilT) [Moraxella catarrhalis strain A_01_mct]
ATGAATACGCCTGATTTGATGGGGTTATTAAGATTTGCCCATCAAAAAAACGCTTCAGATTTACATTTATCCGCCCAACA
GCCCATTATGCTGCGTATTGATGGCAATCTTTTGCCCATGGACATCACGCCCATTGATACAGATGGTATCATGCAGATGC
TACGCCTTGTGATGGATGACACAGATTATCATCAATGGCAACACAATCTTGAACATGATTTTGTACTTTCGCTTGATGGC
ATCGCTCGCTTTCGGGTGAATGTATTTTTTCAGGCACACGGTGCAGCGGCTGTTTTTCGGGTGATAAAAACACACATTCC
CAGCATACAACAGTTAAGCTATGATGAATATATTTATGATAGTATGCTAAAAATAGCCAAGCTTCAGGCAGGCTTGGTAC
TCATCACAGGAGCAACAGGCTCAGGCAAATCAACGACACTTGCCAGTTTTATCGACCACATCAACCAACACCAAAAAAAG
CACATTATCACCATTGAAGACCCCATTGAATATGAGCATAGCTCCAAGCTTTCGCTGATTAATCAAAGGCAAGTCGGTAA
AGATACCCGAAGCTTTCAAAATGCCCTACGCTCAGCGTTGCGTGAAGATCCTGATGTGATCTTAGTTGGCGAACTTCGTG
ATCTTGAGACCATTCGCTTGGCACTGACAGCTGCCGAAACTGGGCATTTGGTGCTGGCAACCTTGCACACGGTCAATGCC
CCAAAGAGTATTGACCGTATCATTGAGGTGTTTGATGCTGGCGAAAAACACATGATTCGCACGATGCTTGCCGACTCACT
AAAGGCGGTGGTCGCCCAACGGCTATTGCCTGCCCAAGGCGGTGGTCGTGTGGCAGCGTTTGAGATTCTCACGCATACGC
CTGCGGTTGCCCATTTGATTCGTGAAAATAAAATTTCTCAGCTGCCTTCTGTCATTCAGACCAGTTTGACCCAAGGTATG
ATTGATTTGACGCAATCTTTATCACGCTTGGCTGAAACAGGCAAAATTACGCCAGCCACTGCCAACGAACAAATCAATAT
GCTGCGATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(13-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter baylyi ADP1

53.116

96.562

0.513
  pilT Legionella pneumophila strain Lp02

52.802

97.135

0.513
  pilT Legionella pneumophila strain ERS1305867

52.802

97.135

0.513
  pilT Vibrio cholerae strain A1552

51.895

98.281

0.51
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

51.895

98.281

0.51
  pilT Neisseria meningitidis 8013

52.994

95.702

0.507
  pilT Neisseria gonorrhoeae MS11

52.695

95.702

0.504
  pilT Acinetobacter baumannii strain A118

51.632

96.562

0.499
  pilT Acinetobacter baumannii D1279779

51.632

96.562

0.499
  pilT Acinetobacter nosocomialis M2

51.632

96.562

0.499
  pilT Pseudomonas stutzeri DSM 10701

50.588

97.421

0.493
  pilT Pseudomonas aeruginosa PAK

49.706

97.421

0.484
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.318

93.696

0.453
  pilU Pseudomonas stutzeri DSM 10701

42.121

94.556

0.398
  pilU Acinetobacter baylyi ADP1

40.118

97.135

0.39
  pilU Vibrio cholerae strain A1552

39.877

93.41

0.372

Multiple sequence alignment