Detailed information NTG1007920

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: H1D10_RS22380
• Genome accession: NZ_LR778142
• Coordinates: 4602593..4603618 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644911.1
• Uniprot ID: -
• Organism: Escherichia coli isolate SC434
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4597593..4608618

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H1D10_RS22350	zapB	4597677..4597922 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
H1D10_RS22355	rraA	4598007..4598492 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
H1D10_RS22360	menA	4598585..4599511 (-)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
H1D10_RS22365	hslU	4599578..4600909 (-)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
H1D10_RS22370	hslV	4600919..4601449 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
H1D10_RS22375	ftsN	4601542..4602501 (-)	960	WP_000068847.1	cell division protein FtsN	-
H1D10_RS22380	cytR	4602593..4603618 (-)	1026	WP_000644911.1	DNA-binding transcriptional regulator CytR	Regulator
H1D10_RS22385	priA	4603774..4605972 (-)	2199	WP_097448267.1	primosomal protein N'	Machinery gene
H1D10_RS22390	rpmE	4606175..4606387 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
H1D10_RS22395	yiiX	4606448..4607056 (-)	609	WP_000702302.1	YiiX family permuted papain-like enzyme	-
H1D10_RS22400	metJ	4607116..4607433 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37805.71 Da
• Isoelectric Point: 6.1617

>NTDB_id=1007920 H1D10_RS22380 WP_000644911.1 4602593..4603618(-) (cytR) [Escherichia coli isolate SC434]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHNRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=1007920 H1D10_RS22380 WP_000644911.1 4602593..4603618(-) (cytR) [Escherichia coli isolate SC434]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACTCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCACAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACTATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTACCTACAGTTCATATAGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAATCGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTCCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCTGGAAGCAAAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625