Detailed information NTG1006463

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PAKAF_RS06765
• Genome accession: NZ_LR657304
• Coordinates: 1440664..1441668 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa PAK
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1435664..1446668

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PAKAF_RS06735 (PAKAF_01347)	fghA	1435756..1436607 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
PAKAF_RS06740 (PAKAF_01348)	ispF	1436678..1437151 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PAKAF_RS06745 (PAKAF_01349)	truD	1437148..1438215 (+)	1068	WP_016253078.1	tRNA pseudouridine(13) synthase TruD	-
PAKAF_RS06750 (PAKAF_01350)	surE	1438203..1438952 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PAKAF_RS06755 (PAKAF_01351)	-	1438985..1439620 (+)	636	WP_015649078.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PAKAF_RS06760 (PAKAF_01352)	-	1439666..1440559 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PAKAF_RS06765 (PAKAF_01353)	rpoS	1440664..1441668 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PAKAF_RS06770 (PAKAF_01355)	fdxA	1442095..1442418 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PAKAF_RS06775 (PAKAF_01356)	mutS	1442485..1445052 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PAKAF_RS06780 (PAKAF_01357)	-	1445178..1446185 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=1006463 PAKAF_RS06765 WP_003113871.1 1440664..1441668(+) (rpoS) [Pseudomonas aeruginosa PAK]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=1006463 PAKAF_RS06765 WP_003113871.1 1440664..1441668(+) (rpoS) [Pseudomonas aeruginosa PAK]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653