Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   ABKP85_RS09825 Genome accession   NZ_CP157379
Coordinates   1946279..1946731 (-) Length   150 a.a.
NCBI ID   WP_406846214.1    Uniprot ID   -
Organism   Lactococcus cremoris strain NZ3900     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1941279..1951731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKP85_RS09795 (ABKP85_09775) - 1942670..1943197 (-) 528 WP_011835692.1 F0F1 ATP synthase subunit delta -
  ABKP85_RS09800 (ABKP85_09780) atpF 1943199..1943705 (-) 507 WP_010906128.1 F0F1 ATP synthase subunit B -
  ABKP85_RS09805 (ABKP85_09785) atpB 1943720..1944433 (-) 714 WP_004255255.1 F0F1 ATP synthase subunit A -
  ABKP85_RS09810 (ABKP85_09790) - 1944480..1944695 (-) 216 WP_004255250.1 F0F1 ATP synthase subunit C -
  ABKP85_RS09815 (ABKP85_09795) - 1944878..1945654 (-) 777 WP_011835694.1 alpha/beta hydrolase family protein -
  ABKP85_RS09820 comEC 1945938..1946231 (-) 294 WP_406846209.1 ComEC/Rec2 family competence protein Machinery gene
  ABKP85_RS09825 comEC 1946279..1946731 (-) 453 WP_406846214.1 ComEC/Rec2 family competence protein Machinery gene
  ABKP85_RS09830 - 1946873..1947121 (-) 249 Protein_1918 DNA internalization-related competence protein ComEC/Rec2 -
  ABKP85_RS09835 comEC 1947115..1947999 (-) 885 WP_406846210.1 ComEC/Rec2 family competence protein Machinery gene
  ABKP85_RS09840 (ABKP85_09805) comEA 1948127..1948783 (-) 657 WP_014735120.1 helix-hairpin-helix domain-containing protein Machinery gene
  ABKP85_RS09845 (ABKP85_09810) - 1948841..1950202 (-) 1362 WP_011835696.1 ABC transporter permease -
  ABKP85_RS09850 (ABKP85_09815) - 1950199..1951131 (-) 933 WP_011835697.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 17159.22 Da        Isoelectric Point: 10.1500

>NTDB_id=1006464 ABKP85_RS09825 WP_406846214.1 1946279..1946731(-) (comEC) [Lactococcus cremoris strain NZ3900]
MRASITAVDIGQGDSIFLQDKFNKENILIDTGGQLALPQKNWQKAQTQSNADKTLIPYLESMGVAHIDQLILTHTDADHV
GDFLSLADKIKIREIWVSPGELTNSSFVEKLKKQKFRFMLVKLGIKFRFLIVFFKFYQMVTLKKVIIMIP

Nucleotide


Download         Length: 453 bp        

>NTDB_id=1006464 ABKP85_RS09825 WP_406846214.1 1946279..1946731(-) (comEC) [Lactococcus cremoris strain NZ3900]
ATGAGAGCAAGCATTACAGCGGTTGATATCGGACAAGGCGATAGTATTTTTCTACAAGATAAGTTTAATAAAGAAAACAT
TCTGATTGATACTGGGGGACAACTTGCTCTTCCTCAAAAAAATTGGCAAAAAGCGCAGACGCAATCAAATGCTGACAAAA
CGCTTATTCCTTATTTAGAATCCATGGGGGTGGCTCATATTGACCAACTTATTCTGACTCATACAGATGCTGACCATGTT
GGTGATTTCTTATCCTTAGCTGATAAAATAAAAATAAGAGAAATCTGGGTCAGTCCGGGAGAATTAACCAACAGTAGTTT
TGTGGAAAAATTAAAAAAGCAAAAATTCCGATTCATGTTAGTAAAGTTGGGGATAAAATTCCGATTTTTGATAGTTTTCT
TCAAGTTTTATCAAATGGTTACACTAAAAAAGGTGATAATAATGATTCCATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(11-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Lactococcus lactis subsp. cremoris KW2

92.063

84

0.773
  comEC/celB Streptococcus pneumoniae TIGR4

48

83.333

0.4
  comEC/celB Streptococcus mitis SK321

47.619

84

0.4
  comEC/celB Streptococcus pneumoniae R6

47.2

83.333

0.393
  comEC/celB Streptococcus pneumoniae Rx1

47.2

83.333

0.393
  comEC/celB Streptococcus pneumoniae D39

47.2

83.333

0.393
  comEC/celB Streptococcus mitis NCTC 12261

49.123

76

0.373

Multiple sequence alignment