Detailed information of TA system TA058272

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): higBA (relBE)/RelE-MqsA
• Location: 442737..443370
• Replicon: chromosome
• Accession: NZ_CP013306
• Organism: Vibrio cholerae strain CRC1106

Toxin (Protein)

• Gene name: higB
• Uniprot ID: Q9KMA6
• Locus tag: ASZ81_RS16920
• Protein ID: WP_000843587.1
• Coordinates: 442737..443069 (+)
• Length: 111 a.a.

Antitoxin (Protein)

• Gene name: higA
• Uniprot ID: -
• Locus tag: ASZ81_RS16925
• Protein ID: WP_000071008.1
• Coordinates: 443056..443370 (+)
• Length: 105 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
ASZ81_RS20855	438178..438381	+	204	WP_001911745.1	hypothetical protein	-
ASZ81_RS20660	438662..438835	+	174	WP_001882305.1	DUF3709 domain-containing protein	-
ASZ81_RS16860	439195..439464	+	270	WP_001198131.1	hypothetical protein	-
ASZ81_RS21015	439782..439953	+	172	Protein_481	DUF645 family protein	-
ASZ81_RS16875	440162..440548	+	387	WP_000703163.1	VOC family protein	-
ASZ81_RS16880	440750..440992	+	243	WP_000107461.1	hypothetical protein	-
ASZ81_RS16885	441163..441540	+	378	WP_000411109.1	hypothetical protein	-
ASZ81_RS20980	441597..441711	+	115	Protein_485	acetyltransferase	-
ASZ81_RS16890	441660..441941	+	282	WP_001894453.1	DUF1289 domain-containing protein	-
ASZ81_RS16905	442107..442220	+	114	WP_001889158.1	hypothetical protein	-
ASZ81_RS16910	442169..442396	+	228	WP_001894457.1	DUF1289 domain-containing protein	-
ASZ81_RS16920	442737..443069	+	333	WP_000843587.1	type II toxin-antitoxin system RelE/ParE family toxin	Toxin
ASZ81_RS16925	443056..443370	+	315	WP_000071008.1	DNA-binding transcriptional regulator	Antitoxin
ASZ81_RS16930	443507..443941	+	435	WP_000256036.1	GNAT family N-acetyltransferase	-
ASZ81_RS20760	444109..444264	+	156	WP_000751734.1	hypothetical protein	-
ASZ81_RS16945	444389..445369	-	981	WP_000019370.1	IS5-like element ISVch5 family transposase	-
ASZ81_RS16950	445437..445743	+	307	Protein_494	CatB-related O-acetyltransferase	-
ASZ81_RS16955	445880..446572	+	693	WP_001047169.1	GNAT family N-acetyltransferase	-
ASZ81_RS16960	446572..446973	+	402	WP_000351248.1	type II toxin-antitoxin system death-on-curing family toxin	-
ASZ81_RS20675	446943..447086	+	144	WP_071908341.1	DUF3265 domain-containing protein	-
ASZ81_RS16970	447161..447574	+	414	WP_000049417.1	VOC family protein	-
ASZ81_RS16975	447788..448039	+	252	WP_001250179.1	type II toxin-antitoxin system Phd/YefM family antitoxin	-
ASZ81_RS16980	448029..448316	+	288	WP_000221354.1	type II toxin-antitoxin system RelE/ParE family toxin	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Genomic island	catB9	-	304741..463550	158809
	Similar MGE(s) Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE. Detail Genome accession Organism MGE type Related TA Coordinates Mash distance View NC_002506 Vibrio cholerae O1 biovar El Tor str. N16961 Integron TA000164, TA000169, TA000166, TA000167, TA000179, TA000170, TA000171, TA000172, TA000173, TA000174, TA000175, TA000176, TA000177, TA000178, TA000168, TA000165, TA010030, TA010035 309750..435387 0.006	inside	Integron	-	-	309821..463174	153353
	Similar MGE(s) Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE. Detail Genome accession Organism MGE type Related TA Coordinates Mash distance View NC_002506 Vibrio cholerae O1 biovar El Tor str. N16961 IS/Tn TA000174, TA000175, TA000176, TA010030 416601..417581 0	flank	IS/Tn	-	-	444389..445369	980

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin HigB-2 (4-100)

Antitoxin

• Cro/C1-type helix-turn-helix domain (43-92)

Sequences

Toxin

Protein

• Length: 111 a.a.
• Molecular weight: 13005.95 Da
• Isoelectric Point: 9.9244

>T58272 WP_000843587.1 NZ_CP013306:442737-443069 [Vibrio cholerae]
MKSVFVESTIFEKYRDEYLSDEEYRLFQAELMLNPKLGDVIQGTGGLRKIRVASKGKGKRGGSRIIYYFLDEKRRFYLLT
IYGKNEMSDLNANQRKQLMAFMEAWRNEQS

Nucleotide

• Length: 333 bp

>T58272 NZ_CP013306:442737-443069 [Vibrio cholerae]
ATGAAAAGTGTATTTGTCGAATCAACAATTTTTGAAAAGTACCGAGATGAATATCTCAGTGATGAGGAGTATAGGCTCTT
TCAAGCAGAGCTAATGCTAAACCCCAAGCTGGGTGATGTGATTCAAGGTACTGGCGGTTTGCGAAAAATTCGAGTTGCGA
GTAAAGGCAAGGGAAAGCGTGGTGGTTCACGGATTATCTATTACTTTCTCGATGAAAAGAGGCGTTTCTATTTGCTAACC
ATTTACGGCAAAAATGAAATGTCTGACTTGAATGCAAATCAAAGGAAACAACTAATGGCTTTTATGGAGGCGTGGCGCAA
TGAGCAATCGTGA

Antitoxin

Protein

• Length: 105 a.a.
• Molecular weight: 11696.20 Da
• Isoelectric Point: 6.7600

>AT58272 WP_000071008.1 NZ_CP013306:443056-443370 [Vibrio cholerae]
MSNRDLFAELSSALVEAKQHSEGKLTLKTHHVNDVGELNISPDEIVSIREQFNMSRGVFARLLHTSSRTLENWEQGRSVP
NGQAVTLLKLVQRHPETLSHIAEL

Nucleotide

• Length: 315 bp

>AT58272 NZ_CP013306:443056-443370 [Vibrio cholerae]
ATGAGCAATCGTGATTTATTTGCAGAGTTAAGCTCAGCTCTTGTTGAGGCTAAGCAGCATTCAGAAGGTAAGCTTACTCT
GAAAACACATCATGTGAATGATGTGGGTGAGTTGAACATCTCACCGGATGAAATCGTGAGTATTCGCGAGCAGTTCAATA
TGTCCCGCGGAGTCTTCGCGCGGTTACTTCATACGTCTTCGCGCACATTAGAAAACTGGGAACAAGGTCGTAGTGTGCCA
AATGGTCAAGCGGTCACTCTTTTAAAGTTAGTACAGCGTCATCCAGAAACGTTGTCACACATAGCCGAGCTATAA

Structures

Toxin

• PDB: 5JA9
• PDB: 8A0X
• PDB: 5MJE
• PDB: 5JA8
• PDB: 5JAA