MGE detailed information
MGE type: Conjugative plasmid MGE length: 92339 bp
Accession: NC_025198 Location: 1..92339 Organism: Escherichia coli Replicon: plasmid pJIE512b
Accession: NC_025198 Location: 1..92339 Organism: Escherichia coli Replicon: plasmid pJIE512b
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H4J97_RS00005 (D616_p157002) | 455..1486 | + | 1032 | WP_000907874.1 | plasmid replication initiator RepA | - |
| H4J97_RS00010 (D616_p157003) | 2395..2664 | + | 270 | WP_000079928.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| H4J97_RS00015 (D616_p157004) | 2664..2942 | + | 279 | WP_001384452.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| H4J97_RS00020 (D616_p157005) | 2982..3830 | + | 849 | WP_001057996.1 | 3'-5' exonuclease | - |
| H4J97_RS00025 (D616_p157006) | 3971..4420 | + | 450 | WP_001236003.1 | hypothetical protein | - |
| H4J97_RS00550 | 4897..5163 | - | 267 | Protein_5 | hypothetical protein | - |
| H4J97_RS00030 (D616_p157009) | 5163..5657 | - | 495 | WP_023278058.1 | hypothetical protein | - |
| H4J97_RS00035 (D616_p157010) | 5713..6315 | - | 603 | WP_000517689.1 | ProQ/FINO family protein | - |
| H4J97_RS00040 (D616_p157012) | 6856..8055 | - | 1200 | WP_000948429.1 | IS91 family transposase ISSbo1 | Transposase |
| H4J97_RS00045 | 8065..8253 | - | 189 | WP_000957857.1 | hypothetical protein | - |
| H4J97_RS00050 (D616_p157013) | 8650..9795 | + | 1146 | WP_000976514.1 | Beta-lactamase | ARG |
| H4J97_RS00055 (D616_p157014) | 9889..10422 | + | 534 | WP_001221666.1 | lipocalin family protein | - |
| H4J97_RS00060 (D616_p157015) | 10419..10736 | - | 318 | WP_000118520.1 | quaternary ammonium compound efflux SMR transporter SugE | - |
| H4J97_RS00065 (D616_p157016) | 10993..11418 | + | 426 | WP_001447736.1 | hypothetical protein | - |
| H4J97_RS00070 (D616_p157017) | 11452..12699 | + | 1248 | WP_237220366.1 | colicin Ia central receptor-binding domain-containing protein | - |
| H4J97_RS00075 (D616_p157018) | 12716..13051 | - | 336 | WP_001080730.1 | colicin 1A immunity protein | - |
| H4J97_RS00080 (D616_p157019) | 13180..13527 | + | 348 | WP_000142441.1 | DUF6404 family protein | - |
| H4J97_RS00085 (D616_p157020) | 13545..14135 | - | 591 | WP_000194573.1 | hypothetical protein | - |
| H4J97_RS00090 (D616_p157021) | 14135..14392 | - | 258 | WP_000371885.1 | hypothetical protein | - |
| H4J97_RS00095 (D616_p157024) | 15016..15273 | + | 258 | WP_172684583.1 | hypothetical protein | - |
| H4J97_RS00100 (D616_p157025) | 15327..16016 | + | 690 | WP_000796232.1 | hypothetical protein | - |
| H4J97_RS00105 (D616_p157026) | 16013..16801 | + | 789 | WP_000016498.1 | site-specific integrase | - |
| H4J97_RS00110 (D616_p157027) | 16981..17625 | + | 645 | WP_001144036.1 | ParA family protein | - |
| H4J97_RS00115 (D616_p157028) | 17712..18020 | + | 309 | WP_000048808.1 | hypothetical protein | - |
| H4J97_RS00120 (D616_p157030) | 18434..19414 | + | 981 | WP_000688519.1 | plasmid segregation protein ParM | - |
| H4J97_RS00125 (D616_p157031) | 19407..19823 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| H4J97_RS00130 (D616_p157032) | 19825..21099 | - | 1275 | WP_000457524.1 | Y-family DNA polymerase | - |
| H4J97_RS00135 (D616_p157033) | 21099..21536 | - | 438 | WP_000109072.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| H4J97_RS00140 (D616_p157034) | 21533..21781 | - | 249 | WP_000618111.1 | DinI-like family protein | - |
| H4J97_RS00145 (D616_p157036) | 22199..23101 | + | 903 | WP_000273912.1 | DUF1281 domain-containing protein | - |
| H4J97_RS00150 | 23098..23409 | + | 312 | WP_014640311.1 | hypothetical protein | - |
| H4J97_RS00155 (D616_p157038) | 23485..24168 | + | 684 | WP_000086121.1 | DNA methylase | - |
| H4J97_RS00160 (D616_p157039) | 24169..24390 | + | 222 | WP_001104893.1 | hypothetical protein | - |
| H4J97_RS00165 (D616_p157040) | 24320..24838 | + | 519 | WP_225089741.1 | DUF1380 family protein | - |
| H4J97_RS00170 (D616_p157041) | 24889..25665 | + | 777 | WP_024135924.1 | hypothetical protein | - |
| H4J97_RS00175 (D616_p157043) | 26083..26508 | + | 426 | WP_001198928.1 | antirestriction protein | - |
| H4J97_RS00180 (D616_p157044) | 26555..26977 | + | 423 | WP_000271763.1 | DUF1380 family protein | - |
| H4J97_RS00185 (D616_p157045) | 26974..27165 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| H4J97_RS00190 | 27499..27567 | - | 69 | Protein_38 | pilus protein | - |
| H4J97_RS00195 (D616_p157047) | 27936..28463 | + | 528 | WP_001276114.1 | single-stranded DNA-binding protein | - |
| H4J97_RS00200 (D616_p157048) | 28521..28754 | + | 234 | WP_000005985.1 | DUF905 family protein | - |
| H4J97_RS00205 (D616_p157049) | 28813..30771 | + | 1959 | WP_001145462.1 | ParB/RepB/Spo0J family partition protein | - |
| H4J97_RS00210 (D616_p157050) | 30826..31260 | + | 435 | WP_000845904.1 | conjugation system SOS inhibitor PsiB | - |
| H4J97_RS00215 (D616_p157051) | 31257..31976 | + | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| H4J97_RS00220 (D616_p157052) | 31973..32569 | + | 597 | WP_000978012.1 | hypothetical protein | - |
| H4J97_RS00225 (D616_p157053) | 33032..33532 | + | 501 | WP_000117622.1 | antirestriction protein ArdA | - |
| H4J97_RS00230 (D616_p157056) | 34261..34695 | + | 435 | WP_032073204.1 | hypothetical protein | - |
| H4J97_RS00235 (D616_p157057) | 34789..35055 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| H4J97_RS00240 (D616_p157058) | 35120..36010 | + | 891 | WP_000038332.1 | Recombination-promoting nuclease RpnA | VF |
| H4J97_RS00245 (D616_p157059) | 36010..36255 | + | 246 | WP_001260884.1 | hypothetical protein | - |
| H4J97_RS00250 (D616_p157060) | 36286..36537 | - | 252 | WP_000148286.1 | helix-turn-helix transcriptional regulator | - |
| H4J97_RS00255 (D616_p157061) | 36596..36769 | - | 174 | WP_001334681.1 | hypothetical protein | - |
| H4J97_RS00260 (D616_p157063) | 37118..37966 | + | 849 | WP_001077021.1 | DUF4942 domain-containing protein | - |
| H4J97_RS00265 (D616_p157064) | 38052..38387 | - | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| H4J97_RS00270 (D616_p157065) | 38621..38953 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| H4J97_RS00275 (D616_p157066) | 38964..41663 | + | 2700 | WP_001474686.1 | Protein TraI | Relaxase |
| H4J97_RS00280 (D616_p157067) | 41700..43991 | - | 2292 | WP_072107381.1 | F-type conjugative transfer protein TrbC | - |
| H4J97_RS00285 (D616_p157068) | 43984..45054 | - | 1071 | WP_000151576.1 | IncI1-type conjugal transfer protein TrbB | - |
| H4J97_RS00290 (D616_p157069) | 45073..46281 | - | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| - | 46461..46523 | - | 63 | - | - | Antitoxin Detail |
| H4J97_RS00295 (D616_p157071) | 46573..46725 | + | 153 | WP_001303307.1 | Hok/Gef family protein | Toxin Detail |
| H4J97_RS00300 (D616_p157072) | 46797..47048 | - | 252 | WP_001291967.1 | hypothetical protein | - |
| H4J97_RS00565 | 47547..47642 | + | 96 | WP_001303310.1 | DinQ-like type I toxin DqlB | - |
| H4J97_RS00305 (D616_p157074) | 47707..48051 | - | 345 | WP_181394993.1 | hypothetical protein | - |
| H4J97_RS00310 (D616_p157075) | 48226..48435 | + | 210 | WP_000062602.1 | HEAT repeat domain-containing protein | - |
| H4J97_RS00315 (D616_p157076) | 48507..49169 | - | 663 | WP_032073207.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| H4J97_RS00320 (D616_p157077) | 49234..51396 | - | 2163 | WP_000698351.1 | DotA/TraY family protein | - |
| H4J97_RS00325 (D616_p157078) | 51493..52077 | - | 585 | WP_001037985.1 | IncI1-type conjugal transfer protein TraX | - |
| H4J97_RS00330 (D616_p157079) | 52106..53308 | - | 1203 | WP_021555368.1 | IncI1-type conjugal transfer protein TraW | - |
| H4J97_RS00335 (D616_p157080) | 53275..53889 | - | 615 | WP_001542516.1 | IncI1-type conjugal transfer protein TraV | - |
| H4J97_RS00340 (D616_p157081) | 53889..56933 | - | 3045 | WP_001024779.1 | IncI1-type conjugal transfer protein TraU | - |
| H4J97_RS00345 (D616_p157082) | 57023..57823 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| H4J97_RS00350 (D616_p157083) | 57807..57995 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| H4J97_RS00355 (D616_p157084) | 58059..58463 | - | 405 | WP_000086957.1 | IncI1-type conjugal transfer protein TraR | - |
| H4J97_RS00360 (D616_p157085) | 58514..59041 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| H4J97_RS00365 (D616_p157086) | 59041..59745 | - | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| H4J97_RS00370 (D616_p157087) | 59745..61034 | - | 1290 | WP_001272005.1 | conjugal transfer protein TraO | - |
| H4J97_RS00375 (D616_p157088) | 61037..62020 | - | 984 | WP_001191877.1 | hypothetical protein | VF |
| H4J97_RS00380 (D616_p157089) | 62031..62723 | - | 693 | WP_000138548.1 | DotI/IcmL family type IV secretion protein | - |
| H4J97_RS00385 (D616_p157090) | 62720..63067 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| H4J97_RS00390 (D616_p157091) | 63085..66852 | - | 3768 | WP_032073208.1 | LPD7 domain-containing protein | - |
| H4J97_RS00395 | 66942..67493 | - | 552 | WP_000014583.1 | Phospholipase D | VF |
| H4J97_RS00400 | 67508..67798 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| H4J97_RS00405 (D616_p157093) | 67795..68943 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| H4J97_RS00410 (D616_p157094) | 68940..69758 | - | 819 | WP_000646098.1 | hypothetical protein | VF |
| H4J97_RS00415 (D616_p157095) | 69755..70213 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| H4J97_RS00420 (D616_p157096) | 70608..71192 | - | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| H4J97_RS00425 (D616_p157097) | 71252..72454 | - | 1203 | WP_000976351.1 | conjugal transfer protein TraF | - |
| H4J97_RS00430 (D616_p157098) | 72539..73363 | - | 825 | WP_001238939.1 | conjugal transfer protein TraE | - |
| H4J97_RS00435 (D616_p157099) | 73514..74668 | - | 1155 | WP_001139957.1 | site-specific integrase | - |
| H4J97_RS00440 | 74652..74984 | + | 333 | WP_094190803.1 | shufflon protein C | - |
| H4J97_RS00445 | 74981..75136 | - | 156 | WP_001302705.1 | hypothetical protein | - |
| H4J97_RS00450 | 75797..76054 | + | 258 | WP_001302706.1 | hypothetical protein | - |
| H4J97_RS00455 | 76189..76437 | + | 249 | WP_001349157.1 | hypothetical protein | - |
| H4J97_RS00460 (D616_p157100) | 76434..77726 | - | 1293 | WP_001417545.1 | hypothetical protein | VF |
| H4J97_RS00465 (D616_p157101) | 77726..78382 | - | 657 | WP_001193553.1 | hypothetical protein | VF |
| H4J97_RS00470 (D616_p157102) | 78367..78927 | - | 561 | WP_000014116.1 | hypothetical protein | VF |
| H4J97_RS00475 (D616_p157103) | 78937..79551 | - | 615 | WP_000959785.1 | hypothetical protein | VF |
| H4J97_RS00480 (D616_p157104) | 79569..80666 | - | 1098 | WP_001208805.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| H4J97_RS00485 (D616_p157105) | 80679..82232 | - | 1554 | WP_032073210.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| H4J97_RS00490 (D616_p157106) | 82243..82695 | - | 453 | WP_001247336.1 | hypothetical protein | VF |
| H4J97_RS00495 (D616_p157107) | 82682..83977 | - | 1296 | WP_000752774.1 | type 4b pilus protein PilO2 | - |
| H4J97_RS00500 (D616_p157108) | 83970..85652 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| H4J97_RS00505 (D616_p157109) | 85666..86103 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| H4J97_RS00510 (D616_p157110) | 86103..87170 | - | 1068 | WP_000742600.1 | hypothetical protein | VF |
| H4J97_RS00560 | 87844..88134 | - | 291 | WP_250697904.1 | hypothetical protein | - |
| H4J97_RS00520 (D616_p157113) | 88339..88593 | - | 255 | WP_001136192.1 | PilI type IV pilus biogenesis protein | - |
| H4J97_RS00525 (D616_p157114) | 88861..89427 | - | 567 | WP_000776428.1 | protein TraD | - |
| H4J97_RS00530 (D616_p157115) | 89441..90124 | - | 684 | WP_000213857.1 | conjugal transfer protein TraC | - |
| H4J97_RS00535 (D616_p157116) | 90378..90911 | - | 534 | WP_001303319.1 | transcription termination/antitermination NusG family protein | - |
| H4J97_RS00540 (D616_p157118) | 91353..91640 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| H4J97_RS00545 | 91558..91836 | - | 279 | WP_219065241.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli strain 746 | Conjugative plasmid | TA80861 | NZ_CP023356 | 1..94881 | 0.01 | |
| Escherichia coli strain 144 | Conjugative plasmid | TA80951 | NZ_CP023365 | 1..92421 | 0.008 | |
| Escherichia coli strain 1283 | Conjugative plasmid | TA81024 | NZ_CP023376 | 1..92420 | 0.008 | |
| Escherichia coli strain 1223 | Conjugative plasmid | TA81101 | NZ_CP023385 | 1..87770 | 0.005 | |
| Escherichia coli strain AR_0006 | Conjugative plasmid | TA88860, TA88861 | NZ_CP024854 | 1..96413 | 0.006 | |
| Escherichia coli O157:H7 strain 3-5-1 | Conjugative plasmid | TA122602, TA122603 | NZ_CP038417 | 1..89216 | 0.009 | |
| Escherichia coli O157 strain AR-0430 | Conjugative plasmid | TA140164, TA140168 | NZ_CP044137 | 1..88229 | 0.004 | |
| Escherichia coli strain SJC33 | Conjugative plasmid | TA211502, TA211506 | NZ_CP080258 | 1..98807 | 0.005 | |
| Escherichia coli strain AR13438 | Conjugative plasmid | TA244857, TA244858 | NZ_CP097172 | 1..96934 | 0.005 | |
| Escherichia coli isolate MSB1_1D-sc-2280324 | Conjugative plasmid | TA292048, TA292049 | NZ_LR898869 | 1..96021 | 0.004 |