Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS01032  |
| T6SS type | Type i4b |
| Strain | Acinetobacter baumannii AB307-0294 |
| Replicon (RefSeq) | chromosome (NZ_CP001172) |
| Location | 2365641..2385051 |
| Function | - |
| Comment | - |
| References | - |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| ABBFA_RS11125 | 2360715..2361893 | - | 1179 | WP_000813825.1 | cyanate transporter | ||
| ABBFA_RS11130 | 2361893..2362375 | - | 483 | WP_000646734.1 | nucleoside deaminase | ||
| ABBFA_RS11135 | 2362391..2363059 | - | 669 | WP_001232203.1 | ankyrin repeat domain-containing protein | ||
| ABBFA_RS11140 | 2363211..2364062 | + | 852 | WP_000460192.1 | LysR family transcriptional regulator | ||
| ABBFA_RS11145 | 2364065..2365018 | - | 954 | WP_000972583.1 | M15 family metallopeptidase | ||
| ABBFA_RS11150 | 2365026..2365628 | - | 603 | WP_000046446.1 | hypothetical protein | ||
| T6CP013377 | TssL | ABBFA_RS11155 (icmH) | 2365641..2366447 | - | 807 | WP_000083629.1 | type IVB secretion system protein IcmH/DotU |
| T6CP013378 | TssK | ABBFA_RS11160 (tssK) | 2366465..2367829 | - | 1365 | WP_000471444.1 | type VI secretion system baseplate subunit TssK |
| T6CP013379 | TssA | ABBFA_RS11165 (tssA) | 2367846..2368940 | - | 1095 | WP_000020713.1 | type VI secretion system protein TssA |
| T6CP013380 | TssH | ABBFA_RS11170 (tssH) | 2368964..2371645 | - | 2682 | WP_000987834.1 | type VI secretion system ATPase TssH |
| ABBFA_RS11175 | 2371864..2372127 | - | 264 | WP_000168112.1 | PAAR domain-containing protein | ||
| ABBFA_RS11180 | 2372144..2372911 | - | 768 | WP_001072410.1 | OmpA family protein | ||
| ABBFA_RS11185 (tagF) | 2372914..2373873 | - | 960 | WP_000557241.1 | type VI secretion system-associated protein TagF | ||
| T6CP013381 | TssM | ABBFA_RS11190 (tssM) | 2373911..2377735 | - | 3825 | WP_000556921.1 | type VI secretion system membrane subunit TssM |
| ABBFA_RS11195 | 2377766..2379178 | - | 1413 | WP_000591871.1 | hypothetical protein | ||
| T6CP013382 | TssG | ABBFA_RS11200 (tssG) | 2379175..2380173 | - | 999 | WP_001190396.1 | type VI secretion system baseplate subunit TssG |
| T6CP013383 | TssF | ABBFA_RS11205 (tssF) | 2380137..2381948 | - | 1812 | WP_000568822.1 | type VI secretion system baseplate subunit TssF |
| T6CP013384 | TssE | ABBFA_RS11210 (tssE) | 2381965..2382441 | - | 477 | WP_001047031.1 | type VI secretion system baseplate subunit TssE |
| T6CP013385 | TssD | ABBFA_RS11215 | 2382521..2383024 | - | 504 | WP_000653195.1 | type VI secretion system tube protein Hcp |
| T6CP013386 | TssC | ABBFA_RS11220 (tssC) | 2383074..2384555 | - | 1482 | WP_001066523.1 | type VI secretion system contractile sheath large subunit |
| T6CP013387 | TssB | ABBFA_RS11225 (tssB) | 2384548..2385051 | - | 504 | WP_001119042.1 | type VI secretion system contractile sheath small subunit |
| ABBFA_RS11230 | 2385068..2385760 | - | 693 | WP_000869711.1 | hypothetical protein | ||
| ABBFA_RS11240 | 2386849..2387250 | + | 402 | WP_000043350.1 | hypothetical protein | ||
| ABBFA_RS11245 | 2387346..2388290 | + | 945 | WP_000542531.1 | ABC transporter permease | ||
| ABBFA_RS11250 | 2388290..2389171 | + | 882 | WP_001000088.1 | ABC transporter ATP-binding protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|---|
| EFF01815 |
ABBFA_RS00605 (LysM) | Tae/Tge | - | Acinetobacter baumannii AB307-0294 | chromosome (NZ_CP001172) | 131953..133701 (+) | 1281361006 |
| EFF01813 |
ABBFA_02439 (Rhs1) | Tde | - | Acinetobacter baumannii AB307-0294 | chromosome (NZ_CP001172) | 2626066..2630838 (-) | 1281363291 |
| EFF01814 |
ABBFA_02243 (Rhs2) | Tde | - | Acinetobacter baumannii AB307-0294 | chromosome (NZ_CP001172) | 2419181..2424052 (-) | 1281363097 |
| EFF01812 |
ABBFA_02229 (Hcp) | - | - | Acinetobacter baumannii AB307-0294 | chromosome (NZ_CP001172) | 2404379..2405287 (-) | 1281363083 |
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|