Detailed information of component protein


Summary

Component ID T6CP013386
Component protein type TssC
T6SS ID (Type) T6SS01032 insolico (Type i4b)
Strain Acinetobacter baumannii AB307-0294
Replicon chromosome
Sequence Protein sequence (494 a.a.); Nucleotide sequence (1482 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) ABBFA_RS11220
Coordinate (Strand) 2383074..2384555 (-)
NCBI ID WP_001066523.1
RefSeq NZ_CP001172
Uniprot ID A0A7U4BM90_ACIBA, A0A0J0ZXP1_ACIBA, A0A427R4M7_9GAMM, A0A427XA76_9GAMM, A0A7U4DCX0_ACIBC, V5VEF2_ACIBA, A0A7U4DG00_ACIB5, A0A654KYL1_ACIBM, A0A5K6CSG4_ACIB3, A0A385EV12_ACIBA
KEGG ID abw:BL01_13270, abz:ABZJ_01455, abk:LX00_06410, abau:IX87_03970
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 4.6e-137 66..368
VipB_2 PF18945.2 6e-45 378..488
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 494 a.a.    

>T6CP013386 NZ_CP001172:c2384555-2383074 [Acinetobacter baumannii AB307-0294] [TssC]
MNNTQSAAMPLVENEEVNLLDSIVEQSRIARNEEEHSRAKSLIGELAKEVMAGTITVSENMTLSIDKRIAEIDALISKQL
SQIMHNEQFQKIESTWRGLYYFCQETPSNPLIKIRMLNTTKKELVKDFQGATDFDQSTLFKKIYEEEYGSFGGAPYSALI
GDFEFDRTPSDMYLLEQISHVAAAAHAPFISAASPSILGLESFTDIDRPRDVSKIFETAEYVQWRSFRDSEDSRYVALTL
PHVLGRLPYHPKEGTATEGFNFIEDVSGENHNEYLWMNAAYAFGTRLTNAFDMHGWCAAIRGVEGGGLVEGLPVHTFKTQ
DGEVVFKCPTEIAITDRREKELSDLGFIPLVHCKNTDYAAFFGAQSTQKPKKYDNDTANANSALSSQIQYIMAVSRIAHY
LKAMMRDKVGSFASAGNVEAFLNEWLSQYVLLDDGASQEAKAQYPLREASVKVVEDPAQPGHYKSVVFLRPHFQLDELSV
SLRLVTELPQSSN*

  Nucleotide sequence: 1482 bp    

>T6CP013386 NZ_CP001172:c2384555-2383074 [Acinetobacter baumannii AB307-0294] [TssC]
ATGAATAATACTCAATCAGCAGCAATGCCACTTGTTGAAAATGAAGAAGTTAATCTTTTGGATTCGATTGTTGAACAAAG
CCGTATTGCACGAAATGAAGAAGAACATTCTCGTGCTAAAAGCTTAATTGGTGAGCTCGCTAAAGAAGTAATGGCAGGGA
CCATTACTGTTTCTGAAAATATGACTTTATCAATCGATAAGCGTATTGCAGAAATTGATGCTCTGATTTCAAAGCAGTTA
AGTCAGATCATGCACAATGAACAATTCCAAAAAATTGAGTCAACTTGGCGTGGTCTTTATTACTTTTGTCAGGAAACGCC
TTCAAATCCGCTCATTAAAATTCGTATGCTCAATACGACTAAGAAAGAGTTGGTAAAAGATTTCCAAGGTGCTACAGACT
TTGATCAAAGCACTTTGTTTAAGAAAATCTACGAAGAAGAATACGGTTCTTTTGGTGGTGCACCATACTCAGCATTAATT
GGTGATTTTGAGTTTGACCGTACTCCATCTGATATGTATTTGCTTGAGCAAATCTCTCATGTTGCAGCGGCAGCACATGC
ACCCTTTATTTCAGCTGCTAGTCCGAGCATTTTAGGCCTTGAATCATTTACAGATATTGATCGTCCTAGAGATGTTTCAA
AAATCTTTGAAACCGCTGAATATGTTCAATGGCGTTCGTTCCGTGATAGTGAAGACTCCCGTTATGTTGCATTGACTTTG
CCTCATGTCTTGGGTCGTCTCCCATATCATCCAAAAGAAGGTACTGCGACAGAAGGCTTTAATTTTATTGAAGATGTTTC
TGGTGAAAACCACAATGAATATTTGTGGATGAATGCAGCTTATGCTTTTGGTACTCGCTTAACAAATGCATTTGATATGC
ATGGTTGGTGTGCTGCTATTCGCGGTGTTGAAGGTGGTGGTTTAGTTGAAGGCTTGCCAGTACATACTTTTAAAACACAA
GATGGCGAAGTGGTATTCAAGTGTCCAACTGAAATTGCAATCACGGATCGCCGTGAAAAAGAGTTAAGCGATCTAGGTTT
CATTCCGTTAGTACATTGTAAAAATACAGATTACGCAGCTTTCTTTGGCGCGCAATCAACTCAAAAACCTAAAAAATATG
ACAATGATACAGCCAATGCAAACTCGGCTTTATCAAGTCAGATTCAGTACATCATGGCTGTTTCACGTATTGCACATTAC
TTAAAAGCAATGATGCGAGATAAAGTGGGTAGCTTTGCTTCTGCTGGAAATGTTGAAGCATTCTTAAATGAGTGGTTGTC
ACAGTATGTCTTACTTGACGATGGTGCTTCTCAAGAAGCAAAAGCTCAATACCCGTTACGTGAAGCGTCTGTAAAAGTTG
TAGAAGATCCTGCTCAACCAGGTCACTACAAATCTGTGGTTTTCTTGCGACCACATTTCCAGCTGGATGAGTTGTCGGTT
TCTTTACGACTTGTCACTGAGTTACCTCAGTCCTCAAATTAA