Detailed information of component protein


Summary

Component ID T6CP013383
Component protein type TssF
T6SS ID (Type) T6SS01032 insolico (Type i4b)
Strain Acinetobacter baumannii AB307-0294
Replicon chromosome
Sequence Protein sequence (604 a.a.); Nucleotide sequence (1812 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) ABBFA_RS11205
Coordinate (Strand) 2380137..2381948 (-)
NCBI ID WP_000568822.1
RefSeq NZ_CP001172
Uniprot ID A0A0J0ZY45_ACIBA, A0A5N4BFA0_ACIBA, A0A7U4DFX5_ACIB5, B0VB01_ACIBY, A0A5K6CST3_ACIB3
KEGG ID aby:ABAYE2411
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 6.8e-146 3..599
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 604 a.a.    

>T6CP013383 NZ_CP001172:c2381948-2380137 [Acinetobacter baumannii AB307-0294] [TssF]
VIEELLPFYEKQLQEFGQQSREFAQKYPKIAQRLSLNQEQIDDPHIERLIQAFSLIAARIDKKLTDSYDVFTRSLFEVMF
PQYLRHFPACSVVSFEDINKIKQLTEPHLVPHHTVLKSRSFKGVQCEFNTTQDVKLLPIHLSGLDFKTTPSAHMHLNQNA
TLSLKFEIFNNAHACLTDEKLPIYLDAISNFPLQVLDSIFKKGTSFAVKYGQTIVELSKNPFELIGFAEQESLLPLDQHT
HHAYRLLMEYFCFPEKFSYLKLDLDFLKRIPQHVSELELLIHFKLNLNDQAVVRNYSELNIANFKLFTTPVINLFEKYAE
PQKIVHKQLEYPLVTDAHHPEFYQVYSILEMNMVREKTNQEESYVPVLPFFAMSHYHNDTARFFYSVNYQKLQSNFVEMG
YSIISKNLNPFSTRSDFISTKLLCSNRDLPHEALGQSNNVLNLNDSSLARRAIVLKRPTKPYKFEQGQSEQWRVISHLSL
NSLALMKGDAVSHVKELLALYNLPQSKENYLIIESIKKLEFSLTHKLVDGKPFPMFVRGVKAELQIDSSVFRGHSLYIFS
QLLSRVFNLKVQINSFVDLVVKDYSSQQELYQCSQNVGGKTLL*

  Nucleotide sequence: 1812 bp    

>T6CP013383 NZ_CP001172:c2381948-2380137 [Acinetobacter baumannii AB307-0294] [TssF]
GTGATAGAAGAGCTTTTACCGTTTTATGAAAAACAATTACAAGAATTTGGTCAACAATCTCGGGAATTTGCCCAAAAATA
TCCAAAAATTGCTCAGCGCTTATCTTTAAATCAAGAGCAAATTGATGACCCACATATTGAACGTCTGATTCAGGCTTTTT
CGCTGATTGCTGCTCGAATTGATAAAAAACTAACAGACAGTTACGATGTTTTTACTCGTTCTTTATTTGAGGTGATGTTC
CCTCAATACTTACGACATTTTCCTGCGTGTTCAGTTGTTAGTTTTGAAGATATTAATAAGATTAAACAGCTTACAGAACC
TCATCTCGTACCTCACCATACGGTTTTGAAATCTCGTAGTTTCAAAGGGGTGCAGTGTGAGTTTAATACAACTCAAGATG
TTAAATTACTACCTATTCATTTAAGTGGTTTAGATTTTAAAACTACACCTAGTGCACATATGCACTTAAATCAAAATGCG
ACGTTGAGCCTTAAATTTGAAATTTTTAATAATGCTCATGCTTGTTTAACTGATGAGAAGCTTCCTATTTATTTGGATGC
TATCTCTAATTTTCCTCTACAGGTCCTTGATAGTATTTTCAAAAAAGGAACCAGTTTTGCGGTTAAATATGGACAAACAA
TTGTAGAATTGAGCAAGAATCCATTCGAATTGATTGGTTTTGCAGAACAAGAAAGTTTATTACCGCTTGATCAACATACC
CATCATGCTTATCGTTTGTTGATGGAATACTTTTGTTTCCCGGAAAAGTTTAGTTATCTTAAGCTCGATTTAGATTTTTT
AAAGCGAATACCTCAGCATGTATCCGAACTTGAGCTTTTAATTCATTTCAAATTAAACTTAAATGATCAAGCCGTTGTTA
GAAACTATTCTGAGCTAAATATTGCAAACTTTAAATTATTTACTACCCCAGTAATTAATTTATTTGAAAAATATGCTGAA
CCCCAGAAGATAGTTCATAAGCAATTAGAATATCCTTTAGTTACAGATGCACATCATCCTGAGTTTTATCAGGTATATTC
AATACTTGAGATGAATATGGTGCGTGAAAAAACAAATCAAGAAGAAAGCTATGTTCCTGTTTTGCCTTTTTTTGCGATGA
GCCATTACCACAATGATACAGCTCGCTTTTTTTACTCAGTAAACTATCAAAAGTTACAGTCCAATTTCGTTGAAATGGGC
TATTCCATTATTTCTAAAAATTTAAATCCATTTTCAACGCGCTCAGATTTTATTAGCACCAAATTATTATGTTCAAACCG
TGATTTACCTCATGAAGCACTGGGTCAGTCTAATAACGTATTAAATTTAAATGATAGTAGCTTGGCGAGACGTGCCATTG
TTTTAAAACGACCTACCAAGCCTTATAAGTTTGAACAAGGCCAAAGTGAACAGTGGCGTGTGATCTCGCATCTTTCATTA
AATAGCTTGGCGCTTATGAAAGGGGATGCTGTTTCTCATGTTAAAGAGCTGTTGGCTTTATATAACTTACCGCAGTCAAA
AGAAAATTATTTAATTATAGAATCAATTAAAAAATTAGAATTTTCGCTTACCCATAAACTTGTAGATGGCAAACCATTTC
CAATGTTTGTAAGAGGAGTGAAAGCTGAATTACAAATTGATTCATCCGTATTTAGAGGGCATAGCTTATATATTTTTAGT
CAGTTATTAAGTCGTGTTTTTAATTTAAAGGTTCAAATTAATAGTTTTGTTGATTTGGTGGTTAAGGATTATTCATCTCA
GCAGGAGTTATACCAATGCAGTCAGAACGTTGGTGGCAAGACTCTTCTGTAA