Detailed information of component protein


Summary

Component ID T6CP013380
Component protein type TssH
T6SS ID (Type) T6SS01032 insolico (Type i4b)
Strain Acinetobacter baumannii AB307-0294
Replicon chromosome
Sequence Protein sequence (894 a.a.); Nucleotide sequence (2682 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene) ABBFA_RS11170
Coordinate (Strand) 2368964..2371645 (-)
NCBI ID WP_000987834.1
RefSeq NZ_CP001172
Uniprot ID -
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 2.2e-41 606..774
AAA_lid_9 PF17871.3 1.3e-24 370..462
AAA PF00004.31 1.2e-11 230..343
ClpB_D2-small PF10431.11 2.3e-11 780..850

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -



  Protein sequence: 894 a.a.    

>T6CP013380 NZ_CP001172:c2371645-2368964 [Acinetobacter baumannii AB307-0294] [TssH]
MMSSLKILITKLSTAARTALEKSANACVLQQNYEIEIEHLFLELLNQPLENDLKILLKKYKISADALADDLKETISQLPK
GNTRTPIFAKSIVRLFEQAWLLASAEQNPVIRSGHLLVALLTAPDLYQIATRASSLFDLFPIDSMKHKFLEICEKSVEQQ
EESKTSSQADELEQAATPTAKTQKTPALDQYTINLTEKAKNGGIDPVIGREYEIRLMLDILMRRRQNNPILTGEPGVGKT
AVVEGLALKIAQGLVPEALKNVHLHVLDMGLLQAGASVKGEFENRLKQVIQEVQSSAHPIILFIDEAHTLIGAGGQAGQN
DAANLLKPALARGELRTIAATTWAEYKQYFEKDAALSRRFQVVKVEEPTEEVAVDMLRAMIPVMQKHFNLQIDDEAIVTA
VHASHRYISGRQLPDKAVSVLDTAAARVALTQNAQPVKLDQLKAQEHNLKLEQQILENEHRQIPIHHERLENLKNQLESL
QSEIQETQEQWQKELELVRKIQELEAQSHSNESEAYDQINLIRKDLADIQGQQPLVFERVNSQIINEIISDWTGIPVGKM
VNDEIKQILTLEDKLGERVMGQDYALTQLVQGIKTSKAKLEDPNKPQGVFLLVGPSGVGKTETALALANELYGGEQHLIT
INMSEYQEAHTVSSLKGAPPGYVGYGQGGVLTEAVRRNPYSVVLLDEIEKAHSDVQELFYQVFDKGTLEDGEGRVIDFKN
TTILLTSNTGSSAIMQACLNQPVEEWPTAEDLIEHLKPSLYKQFKPAFLGRMRIVPYFPLHDDLLVRIIKHKLGKITARI
EKQYGTEVQYSDDLVELLLSRCTEVDSGARNVDNILNSTVLPALATEILVALADQKLPKLIMIDAKDDEIQYLLDPVAKP
AKKRTSKKLKSEV*

  Nucleotide sequence: 2682 bp    

>T6CP013380 NZ_CP001172:c2371645-2368964 [Acinetobacter baumannii AB307-0294] [TssH]
ATGATGAGTAGTTTAAAAATTTTAATTACAAAACTTTCTACAGCTGCACGCACTGCTTTAGAAAAATCTGCTAATGCTTG
TGTTCTTCAGCAAAACTACGAAATTGAAATTGAACATTTATTTTTAGAGTTACTTAATCAGCCTTTAGAAAACGATTTAA
AAATTTTATTAAAAAAATATAAAATCTCAGCCGATGCTTTAGCAGATGATTTAAAAGAAACAATTTCTCAATTACCAAAA
GGTAATACACGTACTCCAATTTTTGCTAAATCAATTGTTCGTTTATTTGAACAAGCTTGGTTATTGGCTTCAGCAGAACA
AAATCCTGTCATTCGTAGTGGTCATTTACTGGTTGCATTATTAACTGCACCAGACCTCTATCAAATTGCAACGAGAGCTT
CGAGTTTATTTGATCTTTTCCCGATAGACTCAATGAAACATAAGTTTCTTGAAATTTGTGAAAAAAGTGTAGAACAACAA
GAAGAATCAAAAACATCTTCACAAGCAGATGAATTAGAACAAGCCGCGACTCCAACTGCAAAAACTCAAAAAACACCTGC
TTTAGATCAATATACAATTAATTTAACTGAAAAAGCGAAGAATGGTGGGATTGACCCTGTTATTGGGCGTGAATATGAAA
TTCGTTTGATGCTTGATATTTTAATGCGCAGACGCCAGAACAACCCAATTTTAACTGGTGAGCCAGGTGTAGGTAAAACA
GCTGTAGTTGAAGGGTTAGCTTTAAAAATTGCTCAAGGTTTAGTTCCTGAGGCATTAAAAAATGTACATTTGCATGTTTT
AGATATGGGGCTTTTGCAAGCTGGGGCAAGTGTTAAAGGTGAATTTGAAAACCGTTTAAAGCAAGTTATTCAAGAAGTCC
AATCATCGGCTCATCCTATTATTTTATTTATTGATGAAGCGCATACGCTTATTGGAGCAGGTGGCCAAGCGGGGCAAAAC
GATGCTGCCAATCTTTTAAAACCTGCACTTGCTCGTGGCGAGTTACGTACTATTGCTGCAACAACATGGGCAGAATATAA
ACAGTATTTTGAGAAAGATGCTGCATTGAGCCGCCGTTTTCAGGTGGTAAAGGTTGAAGAACCGACCGAAGAAGTTGCTG
TGGATATGCTACGTGCAATGATTCCCGTAATGCAAAAGCACTTTAATTTACAAATTGATGATGAAGCAATTGTAACGGCT
GTACATGCCTCTCATCGCTATATTAGTGGTCGTCAGCTCCCAGACAAAGCAGTAAGTGTTCTTGATACTGCAGCAGCGCG
TGTAGCTTTGACCCAAAATGCACAACCAGTCAAACTTGATCAATTGAAAGCACAAGAACATAACTTAAAGCTTGAGCAAC
AAATTTTGGAAAATGAACACCGTCAAATTCCAATACATCATGAAAGATTAGAAAATCTGAAAAACCAACTAGAGTCATTA
CAAAGTGAGATCCAAGAGACTCAGGAACAATGGCAAAAAGAATTAGAGCTAGTTCGTAAAATTCAGGAATTAGAAGCGCA
GAGCCATTCTAATGAGTCTGAAGCCTACGATCAGATTAATTTAATACGCAAAGACCTTGCTGATATTCAGGGACAACAGC
CGTTAGTTTTTGAGCGAGTAAACTCTCAGATTATCAATGAAATTATTTCTGATTGGACAGGTATTCCTGTTGGGAAAATG
GTCAATGATGAAATTAAGCAGATTTTAACGCTTGAAGATAAATTAGGTGAGCGTGTAATGGGGCAAGATTATGCACTTAC
ACAATTAGTTCAAGGGATTAAAACTTCAAAAGCTAAATTAGAAGATCCAAATAAACCTCAAGGGGTGTTCCTTTTAGTCG
GGCCTAGTGGGGTTGGTAAAACTGAAACTGCTTTAGCCTTAGCTAATGAGTTATATGGCGGTGAACAGCATTTAATCACG
ATTAATATGTCTGAGTATCAAGAAGCACATACTGTCTCTTCGCTTAAAGGTGCACCTCCAGGCTATGTGGGCTATGGTCA
GGGTGGGGTTTTAACTGAAGCTGTACGCCGTAATCCTTATAGTGTTGTGTTACTCGACGAAATTGAAAAAGCACATAGCG
ATGTTCAGGAGTTGTTCTATCAAGTATTTGATAAAGGTACTTTAGAGGATGGTGAAGGGCGCGTTATTGACTTTAAAAAC
ACGACAATCTTATTAACTTCAAATACGGGCTCGAGTGCAATTATGCAGGCATGTTTAAATCAGCCTGTAGAAGAATGGCC
TACCGCAGAAGATTTAATCGAACATTTAAAGCCGAGTTTATATAAACAGTTTAAGCCAGCCTTCTTAGGGCGCATGAGAA
TTGTGCCATATTTCCCATTGCATGATGATTTATTGGTTCGAATTATTAAACATAAATTGGGCAAAATTACTGCTCGAATT
GAAAAACAATATGGAACGGAAGTTCAATATTCAGATGACTTGGTCGAGTTGCTACTCAGCCGTTGTACTGAAGTGGATAG
TGGCGCCCGTAATGTTGATAACATCTTAAATTCTACAGTTTTACCTGCTTTGGCAACTGAAATTTTAGTGGCGTTAGCAG
ATCAAAAATTGCCGAAATTGATCATGATTGATGCAAAAGATGACGAGATCCAATATTTACTAGATCCTGTGGCGAAGCCT
GCTAAAAAACGGACTAGTAAAAAGTTGAAATCAGAAGTTTAA